Pukyongiella litopenaei: C6Y53_10655
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Entry
C6Y53_10655 CDS
T05357
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
thas
Pukyongiella litopenaei
Pathway
thas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6Y53_10655 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thas03021
]
C6Y53_10655 (rpoB)
03400 DNA repair and recombination proteins [BR:
thas03400
]
C6Y53_10655 (rpoB)
Enzymes [BR:
thas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6Y53_10655 (rpoB)
Transcription machinery [BR:
thas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6Y53_10655 (rpoB)
DNA repair and recombination proteins [BR:
thas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6Y53_10655 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AVO39743
UniProt:
A0A2S0MVN3
LinkDB
All DBs
Position
2144381..2148517
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFIGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLNSGDAPQPTDGEGIMGVFQSV
FPIKDFNETSVLEFVKYELEKPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVSYRLEK
SRGWATPFFPDRVRSTRPTFDLVDAGSGEVIAEAGKKVTPRKVNEWLKDGSVTELLVPFD
HIVGKFVARDIINEETGAIYVEAGDELTLEYDKDGDLIGGTVKDLIDAGITDIPVLDIDN
INVGPYMRNTMAQDKNMNRETALMDIYRVMRPGEPPTVEAASALFDTLFFDNERYDLSAV
GRVKMNMRLALDKPDTQRTLDREDIVACIKALVELRDGKGDVDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNEGHVTDEVHYMSATEEMRHTVAQANATLDENGNFINELVSTRQSG
DYTLAPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEGKVAIDSGAAIQARRAGIIDQVDAQRIVIRATEDLELGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGDTVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDFGTVVEVRVFNRHGIDK
DERALQIEREEIERLARDRDDEMAILDRNIYARLRGLILGKTAVKGPKGVKSGSEITEEL
LDTLTRGQWWQLALGEEADAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLSDGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGLRIDDALGDYRRSGDLTPVREAMAHAYGEDVYDEGISNMDEAE
LVEAAGNVTRGVPIATPVFDGAKEADVNDALIRAGFDTSGQSVLFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVDE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtccttcatcggccagaaacgtcttcgcaagtattacggcaagatccgcgaa
gtgctggagatgccgaacctgatcgaggtccagaaatcctcgtatgatctgttcctgaat
tccggcgatgcgccccagcccaccgatggcgagggcatcatgggcgtgtttcagtcggtc
tttccgatcaaggatttcaacgagaccagcgtgctggaattcgtgaaatacgagctggaa
aagccgaaatacgatgtcgaggaatgccagcagcgcgacatgacctacagcgcgccgctc
aaggtgacgctgaggctgatcgtgttcgatgtcgacgaggataccggcgccaaatccgtc
aaggacatcaaggaacaggacgtgttcatgggcgacatgcccctgatgacgcccaacggc
acgttcatcgtcaacggcaccgaacgcgtgatcgtgtcgcagatgcaccgctcgcccggc
gtgttcttcgaccatgacaagggcaagacccacagctcgggcaagctgctgttcgcctgc
cggatcatcccctatcgcgggtcgtggctggatttcgaattcgacgccaaggacatcgtc
tttgcccggatcgaccgccgccgcaagctgccggtgaccacgctgctctatgcgctgggc
ctcgaccaggaaggcatcatggatgcctattacaacactgtcagctatcggctggagaag
tcccgcggctgggccacgccgttcttccccgaccgcgtgcgcagcacccgcccgaccttc
gatctggtcgatgcgggttcgggcgaggtgatcgcggaggccggcaagaaggtcacgccg
cgcaaggtgaacgaatggctgaaggacggttccgtcaccgaactgctggtaccgttcgac
catatcgtcggcaaattcgtcgcccgtgacatcatcaacgaggaaaccggcgcgatctat
gtcgaagccggggacgagctgacgctggaatacgacaaggacggcgacctgatcggcggc
accgtcaaggacctgatcgatgcgggcatcaccgacatcccggttctggacatcgacaac
atcaatgtcggcccctacatgcgcaacaccatggcgcaggacaagaacatgaaccgcgaa
accgcgctcatggacatctaccgcgtcatgcgcccgggcgaaccgcccaccgtcgaggcc
gccagcgcgctgttcgacacgctgttcttcgacaacgaacgctatgacctgtccgccgtg
ggccgggtcaagatgaacatgcgcctcgcgctcgacaagccggacacccagcgcacgctg
gaccgcgaagacatcgtcgcctgcatcaaggcgctggtggaactgcgcgacggcaagggc
gacgtggacgacatcgaccacctgggcaaccgccgggtgcggtccgtcggcgagctgatg
gaaaaccagtatcgcgtcggcctgctgcggatggagcgcgcgatcaaggaacgcatgtcc
tctgtcgagatcgacaccgtcatgccgcaggacctgatcaacgccaagccggccgcggcc
gcggtgcgcgaattcttcggctcgagccagctgtcgcagttcatggaccagaccaacccg
ctgtccgaggtcacccacaagcggcgtctgtcggcgctcgggccgggcggcctgacccgc
gaacgcgccggcttcgaggtgcgcgacgtgcacccgacccactatggccggatgtgcccg
atcgagacgccggaaggcccgaatatcggtcttatcaacagcctcgcgacctttgcccgc
gtcaacaaatacgggttcatcgaaaccccgtatcgcgtggtcaacgaagggcatgtgacc
gacgaggtccactatatgtccgcgaccgaggaaatgcgtcacaccgtggcgcaggccaac
gcgacgctggacgagaacggcaatttcatcaacgaactggtcagcacccgccagtccggc
gactacacgctggcgccgcgtgaaaacgtggacctgatcgacgtgagcccgaaacagctg
gtgtcggttgccgcctcgctgatcccgttcctcgagaacgacgacgccaaccgcgcgctg
atggggtcgaacatgcaacgccaggcggtgccgctgctgcgcgccgaggcaccgctggtc
ggcaccgggatcgagggcaaggttgccatcgactcgggcgcggccatccaggcccgccgg
gccggcatcatcgaccaggtcgacgcgcagcggatcgtgatccgcgccaccgaggatctg
gaactgggcgatgccggggtcgacatctaccggatgcgcaagttccagcggtcgaaccag
aacacctgcatcaaccagcggccgctggtgaaggtgggcgacaccgtccgcaagggcgag
gtgatcgccgacggtccgtccaccgacatgggtgaactggcgctgggcaagaacgtggtc
gtcgcgttcatgccgtggaacggctacaactacgaggactcgatcctgatctcggaacgc
atcgcgcgcgacgacgtgttcacctcgatccatatcgaggaattcgaggttgccgcccgc
gataccaagctggggccggaagagatcacccgcgacattccgaacgtgggcgaagaggcg
ctgcgcaacctcgatgaggccggcatcgtctatatcggcgccgatgtcgaaccgggtgac
atcctggtgggcaagatcacccccaagggcgaaagcccgatgacgccggaagaaaagctc
ctgcgcgccatcttcggtgaaaaggccagcgacgtgcgcgacacctcgctgcgggtcaag
ccgggcgatttcggcaccgtggtcgaggttcgcgtgttcaaccgccacggcatcgacaag
gacgagcgggcgcttcagatcgaacgggaagagatcgaacggctcgcccgcgaccgcgac
gacgagatggcgatcctcgatcgcaacatctatgcccgtctccgggggctgatcctcggc
aagaccgcggtgaaggggcccaagggcgtcaagtccggttccgagatcaccgaggaactg
ctggacacgctgacccgcggccagtggtggcaactggcgctcggggaggaggccgacgcg
caggtggtcgaggctctaaacgagcagtacgaggcgcagaaacgcgcgctcgacgcccgt
ttcgaggacaaggtcgaaaaggtccgccgcggcgacgacctgccgccgggcgtgatgaag
atggtcaaggtgttcgtggcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacgggaacaagggcgtgatctcgaaagtggtgccgatggaggacatgccgttcctc
tccgacgggaccccggtcgatttctgcctcaacccgctgggcgtgccgtcgcggatgaat
gtcggccagatcctcgaaacccacatgggctgggccgcgcgcggcctgggcctgcggatc
gacgacgcgctgggcgattaccgccgctcgggcgacctgaccccggtgcgcgaagcgatg
gcccacgcctatggcgaggatgtctatgacgagggtatctcgaacatggacgaagccgaa
ctggtcgaggcggcgggcaacgtcacccgtggcgtgccgatcgcgaccccggtcttcgac
ggcgccaaggaagccgacgtgaacgacgcgctgatccgcgccgggttcgacacctcgggc
cagtcggtcctgttcgacggccggaccggcgaacagttcgcgcgcccggtgaccgtgggc
atcaagtacctgctgaaactgcaccacctggtggacgacaagatccacgcgcgttcgacc
gggccctacagcctggtgacccagcagccgctgggcggcaaggcgcagttcggtggccag
cgtttcggggaaatggaggtctgggcgctcgaagcctatggcgccgcctacaccctgcag
gagatgctgaccgtcaagtcggatgacgtggcaggccggaccaaggtctatgaatcgatc
gtcaagggcgaagacaacttcgaagcgggcgtgccggaatcgttcaacgttctggtgaag
gaagtccgcggcctcggcctgaacatggaactcctggatgcggaggtcgacgagtga
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integrated database retrieval system
