Pukyongiella litopenaei: C6Y53_10660
Help
Entry
C6Y53_10660 CDS
T05357
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thas
Pukyongiella litopenaei
Pathway
thas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6Y53_10660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thas03021
]
C6Y53_10660 (rpoC)
03400 DNA repair and recombination proteins [BR:
thas03400
]
C6Y53_10660 (rpoC)
Enzymes [BR:
thas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6Y53_10660 (rpoC)
Transcription machinery [BR:
thas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6Y53_10660 (rpoC)
DNA repair and recombination proteins [BR:
thas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6Y53_10660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF6241
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AVO38123
UniProt:
A0A2S0MQZ8
LinkDB
All DBs
Position
2148610..2152848
Genome browser
AA seq
1412 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIDPGLTDLSEGQMLTEEEFMDAQDAYGMDAFS
ANIGAEAIREMLAKIDLESEAERLREDLKEATGELKPKKIIKRLKVVEHFIESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGSPIIVPSQDMILGLYYVTLDREGMKGEGKVFGSIEEVEHAL
NAGEVHLHSRITARIPQIDEEGNEVLKRYETTPGRVRLGALLPKNVKAPFDLVNKLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMVMGFREAFKAGISFGKDDMVIPEDKWGIVEDTRG
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDRVTDAMMNTISAVAKDDDGSDKEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRQQDCGTERAITAEAAVNDGEVVASLAERVLGRV
AADDILRPGTDEVIVAAGQLIDERMSDTIDEAGVQSARIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQQGVVAFENAN
TLENAAGEVLVMGRNMKLVIRDENGEERASHKLGYGTRLFVKDGDKVARGDKLFEWDPYT
LPIIAEKAGTAKFVDLVGGIAVRDETDDATGMTQKIVIDWRAAPKGNDLKPEIILVGEDG
EPVRNEAGNPVTYPMSVDAILSVEDGQQLQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEPAEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILESGDTTLLKGEHVDKQEFDTANEKALAQGARPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQRVRRIAQDRDNVVIEARRE
EAEAAAALAAPAEDTMGDPFGDTLVETPENRD
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgtttaacccgctgacaccgccgaaggtgttcgac
gagatcaaggtttcgctggcgagcccggaacggatcctgtcgtggtcctacggcgagatc
aagaaaccggaaaccatcaactaccgcacgttcaagccggaacgcgacgggctgttctgc
gcgcgcatctttggtccgatcaaggactatgaatgcctgtgcggcaaatacaagcgcatg
aaataccgcggcgtcgtctgcgagaaatgcggcgtcgaggtgacgctgcagaaggtgcgc
cgcgaacgcatgggccatatcgaactggcagcacccgttgcgcatatctggttcctgaaa
tcgctgccgtcccgcatcggcctgatgctggacatgacgctgcgcgatctggaacgcgtg
ctctatttcgagaactatgtggtgatcgacccgggcctgaccgacctgagcgaaggccag
atgctcaccgaagaagagttcatggacgcccaggacgcctatggcatggacgcgttcagc
gccaatatcggcgccgaggcgatccgcgagatgctggccaagatcgacctcgaaagcgag
gccgagcgcctgcgcgaggatctcaaggaagccaccggcgaactgaagcccaagaagatc
atcaagcgcctgaaggtggtcgagcatttcatcgaatccggcaaccgcccggaatggatg
gtgctgaccgtgatcccggtgatcccgccggaactgcgcccgctggtgccgctcgacggc
ggccggttcgccacgtccgacctcaacgacctctatcgccgggtcatcaaccgcaacaac
cgtctcaagcggctgatcgagctgcgcgcgcccgacatcatcgtgcgcaacgaaaagcgg
atgttgcaggaatcggtcgatgcgctgttcgacaacggccgtcgcggtcgggtcatcacc
ggcgccaacaagcggccgctgaaatcgctctcggacatgctcaagggcaaacagggccgg
ttccggcagaacctgttgggcaaacgcgtggatttctcgggccgttcggtgatcgtgacc
ggtccggaactcaagctgcaccagtgcgggctacccaagaagatggcgctggagctgttc
aagccgttcatctattcgcggctcgaggccaagggcctgtcctcgacggtgaaacaggcc
aagaagctggtcgaaaaggaacgtcccgaggtctgggacatcctcgacgaggtgatccgt
gaacatccggtcatgctgaaccgggcgccgacgctgcaccggctgggcatccaggccttc
gaacccacgctgatcgaaggcaaggcgatccagctgcacccgctggtctgttcggccttc
aacgccgacttcgacggtgaccagatggccgtgcatgtcccgctgagcctcgaggcgcag
ctggaagcgcgggtcctgatgatgtcgaccaacaacgtgctgtcgccggccaatggcagc
ccgatcatcgtgccgtcgcaggacatgatcctcgggctctactacgtcaccctcgaccgc
gaggggatgaagggcgaaggcaaggtgttcggctcgatcgaagaggtggaacatgcgctg
aacgcgggcgaggtgcacctgcattcgcggatcaccgcgcgcatcccgcagatcgacgag
gaaggcaacgaggttctcaaacgctacgagaccacgccgggccgcgtgcggctgggcgcg
ctgctgccgaaaaacgtcaaggcgccgttcgacctggtcaacaagctgctgcgcaagaaa
gaggtgcagcaggtgatcgacaccgtctaccgctattgcggacagaaggaatcggtcatc
ttctgcgaccagatcatggtcatgggcttccgcgaagcgttcaaggccggcatctcgttc
ggcaaggacgacatggtgatccccgaggacaaatggggcatcgtcgaggacacccgcggc
caggtcaaggatttcgaacagcaatacatggacggcctgatcacccagggtgagaaatac
aacaaggttgtcgatgcctggtcgaaatgcaacgaccgcgtcaccgatgcgatgatgaac
accatctcggccgtggccaaggacgatgacggctccgacaaggaaccgaactcggtctac
atgatggcccattccggcgcgcggggctcggtcacgcagatgaaacagctgggcgggatg
cgcggcctgatggccaagcccaacggcgacatcatcgaaacgccgatcatctcgaacttc
aaggaaggcctgaccgttctcgaatacttcaactcgacccacggcgcccgcaagggcctg
tcggataccgcgctgaagaccgcgaactcgggctacctgacccggcgcctggtggacgtg
gcgcaggattgcatcgtgcgccagcaggattgcggcaccgagcgggcgatcacggccgaa
gcggccgtgaacgacggcgaggtcgtggcatcgctggccgagcgcgtgctgggccgcgtc
gcggccgacgacatcctgcgtccgggcaccgacgaggtgatcgttgcggccggtcagctg
atcgacgaacgcatgtccgacaccatcgacgaggccggcgtgcagtcggcgcgcatccgg
tcgccgctgacctgcgaggccgaggaaggcgtctgtgccatgtgctatggccgcgacctg
gcccgtggcaccatggtgaacaccggcgaggccgtcggcatcatcgccgcgcagtcgatc
ggggaaccgggcacccagctgaccatgcggaccttccacatcggtggtgtcgcgcagggc
gggcagcaatccttcctcgaagccagccagcagggtgttgtcgcgttcgagaacgccaac
acgctggaaaacgcggcgggtgaagtgctggtgatgggccgcaacatgaagctcgtcatc
cgcgacgagaacggcgaggaacgtgccagccacaagctgggctacgggacgcgcctgttc
gtcaaggacggcgacaaggtggcccgtggcgacaagctgttcgaatgggatccctacacc
ctgccgatcatcgccgaaaaggccggcaccgccaagttcgtcgacctcgtgggcggcatc
gccgtgcgcgatgaaaccgacgatgcgacgggcatgacccagaagatcgtgatcgactgg
cgcgccgcgcccaagggcaacgatctcaagcccgagatcatcctggtcggcgaggacggc
gaaccggtgcgcaacgaggccggcaatcccgtgacctacccgatgtcggtggacgcgatc
ctgtcggtcgaagatggccagcagctgcaggccggcgacgtggtggcgcggatcccgcgc
gagggcgccaagaccaaggacatcaccggtggtctgccgcgggtggcggaactgttcgag
gcgcgccgtcccaaggatcacgcgatcatcgccgaaatcgacggctatgtgcggttcggg
cgcgactacaagaacaagcgccgcatcagcatcgaacccgccgacgagtcgatggaaccg
gccgaatacatggtgcccaagggcaagcatatcccggtgcaggaaggcgacttcgtgcag
aagggcgactatatcatggacggtaatcccgcgccgcatgacatcctgtcgatcatgggt
gtcgaggcgctcgccgattacatgatcgacgaggtgcaggatgtctatcgtctgcagggc
gtgaagatcaacgacaagcatatcgaggtgatcgtccggcagatgctgcagaaatgggag
atcctggaaagcggcgacaccacgctgctcaagggtgaacatgtcgacaagcaggaattc
gacaccgccaacgaaaaggcgctggcgcagggtgcccgcccggcacagggcgaaccgatc
ctgctgggcatcaccaaggcgtcgctgcagacgcggtccttcatctcggcggcgtccttc
caggaaaccacccgcgtgctgaccgaagcctcggttcagggcaagaaggacaagctggtg
ggcctgaaggaaaacgtgatcgtcggccgcctgatcccggccgggaccggcggtgccacc
cagcgggtgcgccggatcgcgcaggatcgcgacaacgtggtgatcgaggcccgccgcgaa
gaggccgaggccgccgcggccctggccgcgcccgccgaggacacgatgggcgatcccttt
ggcgatacgctggtcgagacgcccgaaaaccgggattga
DBGET
integrated database retrieval system
