Pukyongiella litopenaei: C6Y53_18730
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Entry
C6Y53_18730 CDS
T05357
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thas
Pukyongiella litopenaei
Pathway
thas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6Y53_18730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thas03019
]
C6Y53_18730
Enzymes [BR:
thas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6Y53_18730
Messenger RNA biogenesis [BR:
thas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6Y53_18730
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
NAT10_TcmA_helicase
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AVO39902
UniProt:
A0A2S0MVK4
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All DBs
Position
3867835..3869139
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AA seq
434 aa
AA seq
DB search
MGLPAALVQRLADMGITQPTPIQKQAIPHALNGRDVMGLAQTGTGKTAAFGLPLVTRMLG
YGRKPDRYTVRGLVLAPTRELAGQIVQTLRAMAEDTPLKVGMVVGGQSINAQMKRLERGT
DLLVATPGRLLDLLDRNALTLESCDFLVLDEADQMLDLGFIHALRKIAGLLPEDRQTMLF
SATMSKQMNEIAQSYLNRPVRVEVSPPGKAADKVTQAVHFIAKAEKTNLLIELLDAHRDE
RALVFGRTKHGSEKLMRVLEKAGFAAGSIHGNKSQGQRDRAIAAFKAGEIKVLVATDVAA
RGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKAIQKVMGL
SIPVASGRPWEPVEDPAAPKRRGGGRRGPGGKPGGNPGGKSGAAPGGQRRRRRGPPRGKR
GGAQGGGGGRSSAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgccggcggcgctggtgcagcggctggccgacatgggcataacccaaccgacc
ccgatccagaaacaggcgatcccgcacgcgctgaacgggcgcgacgtgatggggctggcg
cagaccggcaccggcaagaccgcggccttcggcctgccgctggtcacgcggatgctgggc
tacgggcgcaagcccgaccgctacaccgtgcgcgggctggtgctggcgcccacccgcgaa
ctggccgggcagatcgtccagaccctgcgcgcgatggccgaggacacgccgctgaaggtc
ggcatggtcgtcggcggccagtcgatcaacgcccagatgaaacggctggaacgcggcacc
gacctgctggtggcgacgccggggcggctgctcgacctgctggaccggaacgcgctgacg
ctggaaagctgcgatttcctggtgctggacgaagccgaccagatgctcgatctcgggttc
atccacgcgctgcgcaagatcgccgggctgctgccggaggatcgccagacgatgctgttc
tcggccacgatgtcgaaacagatgaacgagatcgcccagagctatctgaaccggcccgtc
cgggtcgaggtctcgccgccgggcaaagccgccgacaaggtgacgcaggcggtgcatttc
atcgccaaggcggaaaagaccaacctgctgatcgagcttctggacgcgcaccgggacgaa
cgcgccctggtgttcggccggaccaagcacggatcggaaaaactgatgcgggtgctggaa
aaggccgggtttgccgccgggtcgatccacggcaacaagagccagggccagcgcgaccgc
gccatcgccgccttcaaggccggcgagatcaaggtgctggtggccaccgacgtggccgcg
cgggggctggacatcccggacgtgaaacacgtctacaactatgacctgcccaacgtgccc
gacaattatgtgcaccgcatcgggcgcaccgcgcgcgccggcaaggacggcgccgcgatc
gcgttctgcgcgcccgacgagatgggcgaactgaaggcgatccagaaggtgatgggcctg
tcgatcccggtggcctcgggccgcccctgggaaccggtcgaggatcccgcagcgcccaag
cggcgcggtggcgggcgccggggccccggtgggaaacccggtggcaaccccggcggcaaa
tccggtgccgcacccggcggccagcgccgccggcggcgcggcccgccgcgcggcaagcgg
ggcggcgctcaggggggcggtggcggccggagctcggccgcctga
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