Thalassomonas haliotis: H3N35_08025
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Entry
H3N35_08025 CDS
T08805
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
that
Thalassomonas haliotis
Pathway
that03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
that00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3N35_08025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
that03019
]
H3N35_08025
03009 Ribosome biogenesis [BR:
that03009
]
H3N35_08025
Enzymes [BR:
that01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3N35_08025
Messenger RNA biogenesis [BR:
that03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3N35_08025
Ribosome biogenesis [BR:
that03009
]
Prokaryotic type
rRNA helicases
H3N35_08025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WDE13373
LinkDB
All DBs
Position
1909150..1910937
Genome browser
AA seq
595 aa
AA seq
DB search
MTDTNNAAVGFESLGLPETLLTALNSLGFASATDIQAQTIPPLLAGKDVLGEAQTGTGKT
AAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFSKNIKGLRVATLYGGQSYGP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDNLSFCVLDEADEMLNMGFLDDIEWILEHL
PEQTQMALFSATMPPQIRKVANRFLKEPEHIKIAAVKKAKANIKQYAWKVSGINKMTALE
RIAETVEYDAMIIFVRTRNDTVDVAEKLERLGYPAVALNGDMNQAQRERTVDQLKSGKSS
IMVATDVVARGLDIPRISLVVNYDLPGDNEAYVHRIGRTGRAGRSGTSISFVRPREMYSL
RHYERLTSGTIEQYELPTIQEIGKARIERTREELASVVADKELASMREIIESMANESELS
MVDLAAALLYQKQLKQPLQPKEDPKPRREARDRNDRNDRNGRRDARGGRDGRDNRGNRDN
RGERAPRKPKAVRSDVDWQTYRLEVGKEHGAKPGDIVGAIANEISLDSSYIGAINLHDRH
SYVQLPKGIPTGAFQQLKTVRVRRQALEISVSDAPAAHERPRRSHERSERSRRAN
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgactgatacaaacaatgccgctgtcggctttgaatctttaggcttgcctgaaacttta
ttaactgctttaaattctttaggatttgcctctgcgaccgatatccaggcgcaaaccatt
cccccgttattagcaggtaaagatgttttgggtgaagcgcaaacaggtaccggtaaaacc
gctgcatttggtttaccggcactggcgaaaattgatacttccatcaaaaagccacagtta
atggtcctggcaccgacccgtgaactggcgatgcaggtagctgaagctatcgagtccttt
tccaaaaacatcaaaggcttgcgtgttgccactttatacggtggtcaatcttatgggccg
caattccagcagcttgagcgtggcgcccaggtagtcgttggtactccgggtcgtttaatg
gaccacttacgccgtaagagcctgaagctggataacctgtctttctgtgtgcttgatgaa
gccgatgaaatgctgaacatgggctttttggatgacatcgaatggatccttgagcacttg
ccagagcaaacgcaaatggccttgttctcggccactatgccgccgcaaatccgtaaggtg
gcgaaccgtttcttaaaagagcccgagcatattaaaattgccgcggtgaaaaaagccaaa
gccaatatcaagcaatacgcctggaaagtgagcggcatcaataaaatgaccgcgttagag
cgtatcgccgaaaccgtagaatacgatgccatgattattttcgtgcgcacccgtaacgat
actgtcgatgttgccgaaaaattagaacgtttgggctacccggcggttgccttaaacggc
gatatgaaccaggcacaacgtgagcgtaccgtagaccagttaaaatccggtaagtcttct
atcatggttgccaccgacgtggttgcccgtggcctggatattccgcgtatctctttggtg
gttaactatgatctgccgggtgataacgaagcttatgttcaccgtatcggccgtaccggt
cgtgccggtcgcagcggtacctcgatttctttcgtacgtcctcgcgaaatgtactcttta
cgccattatgagcgtttaacttcgggtactattgagcagtatgaactaccgactatccag
gaaatcggtaaagcccgtatcgaacgtacccgtgaagagctggcgagtgttgttgccgat
aaagaattggcaagcatgcgtgaaatcattgagagtatggccaacgagtcagagctttct
atggtagatttagccgcggcgctgttataccagaagcagttaaagcagccgctgcagcca
aaagaagatcctaaacctcgccgtgaagcacgtgaccgtaacgaccgtaacgatcgcaat
ggccgtcgtgatgcacgcggtggccgtgacggacgtgacaaccgcggcaaccgggacaac
cggggtgaaagagcgccgcgtaagcctaaagcagtacgcagcgatgtcgattggcagact
taccgtttagaggtaggtaaagagcacggtgctaagccgggtgatattgttggcgctatt
gccaacgagatttcattggacagcagttatatcggcgccatcaacctgcatgaccgtcac
agttatgttcagttgccaaaaggtatccctaccggtgctttccagcagctgaaaacggta
cgtgtccgtcgtcaggcattggagatttctgtttctgatgctccggccgcccatgaacgt
cctcgtcgttctcacgagcgttcagagcgctccaggcgtgctaactaa
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integrated database retrieval system
