Thalassomonas haliotis: H3N35_12170
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Entry
H3N35_12170 CDS
T08805
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
that
Thalassomonas haliotis
Brite
KEGG Orthology (KO) [BR:
that00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
that03019
]
H3N35_12170 (hrpA)
Enzymes [BR:
that01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H3N35_12170 (hrpA)
Messenger RNA biogenesis [BR:
that03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H3N35_12170 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
ResIII
HA2_N
UvrD-helicase
SLFN-g3_helicase
NTPase_1
NACHT
ABC_tran
TsaE
AAA_30
T2SSE
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WDE14510
LinkDB
All DBs
Position
2922178..2926047
Genome browser
AA seq
1289 aa
AA seq
DB search
MPSLFKLLDQVALADKARLKKRLFGLKKINKEDKREKARQQIAAAIDRSIKRKQHKLAHR
PKISYPGELPVSQNVDHIAKAISENQVVIIAGETGSGKTTQIPKICLELGRGIDGVIGHT
QPRRIAARTVANRIADEMNTKLGEQVGYKVRFNDQVSEHSYIKLMTDGILLAEMQTDRLL
RQYDTLIIDEAHERSLNIDFILGYVKQILPKRPDLKVIITSATIDPERFSRHFENAPIIE
VSGRTYPVEMLYRPLAEQEDVDIISGILQAVDELSAIGQGDILVFLNGEREIRDTASALE
KAQLPHTQILPLYARLTVQEQNRIFQSHSGRNIVLATNVAETSLTVPGIKYVIDPGTARI
SRYSYRTKVQRLPIEPISQASANQRAGRCGRVSSGVCIRLYSEEDFLGRPEFTDPEILRT
NLATVILQMLALDLGDIGEFPFVQPPDNRNINDGIRLLEELDAIAGNKGKTSLTKNGRLL
AKFPIDPRLSKMILSAIELGCIEQVFAIVSALSIQDPRERPHEKQQAADEKHARFKDKSS
DFVSLLNLWQYVNEQQKALTNNQFRRLCQKEYLSYIRIREWQDINAQLRQTLKEQNIAMS
SVDSEDENQLTLVHQALLSGLLSHIGQQDENREFKGARGSKFFVFPGSALAKKPPKWLMA
SELVETSRLFARMVARIDPLWLEPMAGHLVKRSYSEPHWEKKQGAVMAYEQVSLYGLIIV
PKRKVSFNQIEPYTCREIFIREALVNYDIALKEAFFKHNRELVASIEALEQKARRKDFLI
EEQHLVDFYEQKLPDNVICQRSFLSWWKKAKKTDDKLLHFTREFLLNEDSNELSSHDYPD
TWHQDNLILPLSYHFSPGDIDDGISVMIPVGILNQVQAEGFDWLIPALRGELIIALIKGL
PKTLRRNFVPAPNYAQACDAALSEGDGPLTAAVAKQLLRMTGVRLPEDCWHEIELPVHLT
MNFKILDEKNKLIRQGRDLNALKAQLQGKVKATIKQVADKGIEQDKLTAWDFGELPLGYQ
RKVANMTIKAFPALVDHKSTVAIELFEQEVQAQQAMLSGISRLILLNIPSPVKYLQEKLP
NKAKLGLYFNPFGAIADLLQDCINAACRHLVAQQGDLPRGEADFKRSRDFVRAEIADCVL
QAAIKVEKCLSLAHDIRKLLKGKVALNVIQSHGDIKDQLDKLIFKGFVTASGIDKLDDIN
RYLSGILRRLEKLPVDPNQDRLKMLEVDKVSELWQKLIGKQRKDQPLLQEIADIKWMIEE
YRVSLFAQNLGTAYPVSGKRIVNYLKEFA
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atcccgtcattatttaaattattagaccaggtggccttagcggataaggcacgcttgaaa
aaacgtttattcggcttaaaaaaaatcaataaagaagataagcgtgaaaaagcccggcag
cagattgccgctgccattgaccgttcgataaaacgcaagcaacataaacttgcccatcgc
cctaagatcagttatccgggtgaattacctgtctcgcaaaatgtcgatcatattgccaaa
gccattagcgaaaaccaggtggtaattattgccggtgaaactggctcaggtaaaaccacg
cagatccccaaaatatgcctggaactggggcggggtatcgacggggttatcggccatacc
cagccaagacggattgcggcacgtacggtagccaaccgtatcgccgatgaaatgaacact
aagcttggcgagcaggtcggttataaggtcaggtttaacgaccaggtgagcgagcatagc
tatatcaagctgatgacagacggtatcttgctggcggaaatgcaaactgaccgcctgctg
cgccagtacgataccctgatcatagatgaggcccatgaaagaagcctcaatatcgatttt
attctcggttatgtgaaacaaatattacccaaacgtcctgatttaaaggtgatcattacc
tcggcgactatagatcccgagcgcttttcccgccactttgaaaatgcgcccattattgaa
gtctcggggcgtacctatccggtagaaatgttataccggccgctggcggagcaggaagat
gtcgatattatctcaggtatcttacaggcagtggatgagctcagcgccatcggccagggt
gatatcctggtgtttcttaacggtgagcgggaaattcgcgataccgccagcgccctggaa
aaggcgcaactgccccatacccagatcttgcctttatacgccaggttgacggtgcaggag
caaaaccgtattttccagtcccacagcggccgtaatatcgtgctggcgactaatgttgcc
gaaaccagtttgacggtacccggcattaaatatgttattgacccggggacggctcgtatt
tcccgttacagttaccgcactaaagttcaaaggctgccgatagagcctatctcccaggcc
agtgccaatcaaagggcggggcgctgcggccgggtctcatccggggtatgtatccgcctg
tatagcgaggaagactttctcggccgcccggaatttaccgatccggaaattctgcgcact
aacctggccacggttattttgcaaatgctggccttggatctcggcgacatcggcgaattt
ccttttgtgcagccgccggataaccgcaatatcaatgacggtatccgcttactggaagag
cttgatgccattgccggcaacaagggcaaaaccagcttaacgaaaaatggccgtttgctg
gccaagttcccgatagatcccaggttatcgaaaatgatcctcagtgctatcgagcttggc
tgtatcgagcaggtgtttgccatcgtcagcgctttgagcatacaagatccgcgtgaacgt
ccccatgaaaaacaacaggcggcggatgaaaaacatgcccgttttaaagacaaaagctca
gattttgtctccctgcttaatttatggcaatacgtcaatgaacagcaaaaggcgctcacc
aataaccagttcaggcgtctatgtcagaaagaatacctaagttatatccgcatacgggaa
tggcaggatattaatgcccagttaagacaaaccttaaaagagcaaaatattgccatgagc
tcggtggacagcgaggatgaaaaccagctgactctggtgcatcaggcactgttatccggc
ttgctcagccatattggccagcaggatgagaaccgtgaatttaaaggggccaggggcagt
aagttttttgtattccccggctctgcgctggcgaaaaagccgcctaaatggctgatggcc
tccgagctggtggaaaccagccgtttgtttgcccgtatggtcgcccgcatcgatcccctg
tggctggagcctatggccggccatctggttaaacgcagctacagtgagccccactgggag
aaaaagcagggggcggtgatggcttatgaacaggtctctctctatggcctgatcatagtg
cctaagcgcaaagtgagttttaaccagattgaaccatatacctgccgggaaattttcatc
cgtgaagccctggtgaattacgatattgccttaaaagaagccttctttaaacataaccgc
gagctggtggccagtatcgaagcgctggagcaaaaagcgcgtcgtaaagattttctgatc
gaagagcagcacctggtggacttttacgagcaaaagctgccggacaatgttatttgtcag
cgcagctttttaagctggtggaaaaaagcgaaaaaaaccgacgacaagttattacatttt
acccgggagtttttgctgaatgaggactcgaatgagttatccagtcacgactacccggat
acctggcatcaggacaacctgatcttgccgctcagttatcatttcagccccggcgatatc
gatgatggtatcagcgtgatgatcccggtggggatcctgaatcaggtgcaagccgaaggt
tttgactggttgatcccggcgttgcggggggagctgatcatcgccttaattaaaggcctg
ccgaaaaccctgcgccgtaattttgtacctgcgcctaattatgcccaggcctgtgatgcg
gcgcttagcgaaggagacgggccgttaacggcggcagtcgccaagcagctgctgcgcatg
accggggtgcgtttaccggaagattgctggcatgaaatagaattgcctgtgcatttgacc
atgaactttaaaattctcgatgagaaaaacaagttgatccgccagggccgtgacctcaac
gcattaaaagcgcagctgcagggcaaagtgaaagccaccatcaagcaggtggcggataaa
ggcatagagcaggacaagctaaccgcatgggactttggcgagctgcctcttggttatcag
cgcaaggtggccaatatgactatcaaggcctttcctgcgctggttgatcataaatccact
gtggccatcgaactgttcgagcaggaagttcaggcgcagcaggcaatgctgagtggtatt
agccgcttgattttattaaatattccttcgccggtaaaatacctgcaggaaaagctgccc
aacaaagccaagttgggcctgtattttaatccttttggcgccatcgccgatttattgcag
gattgtatcaatgccgcctgtcgtcatctggtggcgcagcagggggatctgcccagggga
gaagccgattttaagcgcagccgggatttcgtccgtgcggaaattgccgattgtgtgttg
caggcggcaatcaaggtggaaaaatgtctaagcctggcccatgatatccgcaaactgctc
aagggcaaggtggcgttaaatgtcatccagtcccacggcgatatcaaggaccagctggac
aagcttatttttaaaggttttgtgaccgcctccggcatagataaactcgacgatattaac
cgctacttaagcggtattctacggcgccttgagaaactgccggtagatcccaaccaggac
aggctgaaaatgctggaagtggataaggtctctgaactgtggcaaaaactgataggcaag
caaagaaaagatcagccgctgttgcaggagatagcggatatcaaatggatgatcgaagaa
tacagggtgtcgttatttgcgcaaaatctgggcacggcctacccggtttccggcaaacgt
attgttaattacctgaaagagtttgcttaa
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integrated database retrieval system
