Thalassomonas haliotis: H3N35_15945
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Entry
H3N35_15945 CDS
T08805
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
that
Thalassomonas haliotis
Pathway
that03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
that00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3N35_15945 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
that03019
]
H3N35_15945 (rne)
03009 Ribosome biogenesis [BR:
that03009
]
H3N35_15945 (rne)
Enzymes [BR:
that01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H3N35_15945 (rne)
Messenger RNA biogenesis [BR:
that03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3N35_15945 (rne)
Ribosome biogenesis [BR:
that03009
]
Prokaryotic type
rRNA processing factors
H3N35_15945 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WDE09808
LinkDB
All DBs
Position
3783722..3786928
Genome browser
AA seq
1068 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQRLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDY
GAERHGFLPMKEIARDYFPKGYTFQGRPNIKEVLREGQEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKASLSKLDLPKGMGLIVRTAGVGKSYEEL
EWDLSVLLHHWKAIDDAAKSRPAPFLIHQETNLILRAIRDYLRRDIGEVLIDRPKIYESV
KKHIEVVRPDFLSKVKLYNNDVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEAMTS
IDINSARATKGGDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMREAVHQDRARIQLGRISRFGLLEMSRQRLRPSIGETSQGICPRCNGTGHVRGIESLAL
SILRLMEEEAIKENTLHVQAQVPVPVATYLLNEKRRSVFHIEKHHNVHVLIIPNPHMDTP
QYEVLRVRKDESVDDASYELPIQQAKTEEAVMPKFNKEASKRDEPIVQGLSAPKRVPASA
EKAPAVKAKEQVSEGVFSGLFNWLKNLFAAPETQVAEPAQVEKKPAKAQEQQERRPRRNR
QSQRKNRRSGDKADNRADSRTDNRDSRDNRDNKESRDNRDSRDSNRAKQQGRKAEQSKTQ
KPKEEKVAERRQRRSNRKKIRINNAAAETGNENLPARQAPETLVSKEKIAKDTTAKSEEK
QAVITTQTEAELQAEENVEKAAREERPRNRRSPRHLRSHGQRRRRTNADSEQQASNTETV
TSTEVSEDPVVSRYPEQEQVSSKAAQEESETHSEAAPSVEAQAKETAETQAVEATKAVET
QTDEAAPASVVEAQADEAAPAPVVEAQADEAAPAPVVETQADEAAATQLVETQADEAAAA
PVVETQADEAAAAPVVETQADEAAPAPVVETQADEATPAAVATPESSAQEVQQQLPLEEE
VTTEQRQASETQASAQPGEKADSAEKKTEKKAVKRPVKAKKKRLKTNGDIRLKGKASSPM
AKPVTINTVNELPTAFFAAEDRKRALTSGKNAIAADATSRSAAGPTKP
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaattaacgctacacaatcggaagaattacgtgtagccctggttgat
ggccagcgtctttacgatttagacatcgaaagtcccggccacgaacaaaaaaaatccaat
atctataaggcaaaaatcacccggattgagccttccttagaagccgcctttgtcgattac
ggcgctgaaaggcacggtttcttgcccatgaaagaaatcgcccgcgactacttccctaaa
ggttataccttccagggccgcccgaatatcaaagaagttttacgtgaaggccaggaagtc
attgtccagatagataaagaagagcgcggccaaaaaggcgcggcattaaccacctttatc
agcctcgccggcagctacctggtgctgatgcccaacaaccccagggccggtggcatctcc
cgtcgcatcgaaggggacgaacgtaccgagctaaaagcctccttaagcaagctggacctg
cctaaaggcatgggacttatcgtacgtaccgcaggcgtaggcaaatcctacgaagagttg
gagtgggatttaagtgttctgctgcaccactggaaagccattgacgatgccgccaagagc
cgccctgccccgtttttaatccatcaggaaaccaatttaattttacgggcgatccgcgat
tacctgcgccgcgatatcggtgaggtcttgattgaccgcccgaaaatttatgaaagtgtg
aagaagcacattgaagtggtgcgtcccgactttttaagtaaggttaagctttataataac
gatgtgccgttatttacccactaccagatagaaacgcaaatagagtcggcattccagcgg
gaagtgagactgccgtcgggcggctccatcgtcatcgatcccaccgaagccatgacctcc
atcgatatcaactccgcccgggcaaccaaaggcggcgatatcgaagaaaccgcctttaat
accaacctggaagcggcagaagaaattgcccgtcagttaaggcttagagatttaggcggc
ctggtggtgatcgactttatcgatatgacaccggtacgccatcagcgggaagtagaaaac
cgcatgcgcgaagccgtgcatcaggacagggcccgtatccagctgggacgcatttcccgt
ttcggcctgctggaaatgtcccgccagcgcctgcgcccgtccatcggcgaaaccagccag
ggcatttgcccacgctgtaacggtaccggacacgtacgcggcatagaatcactggcgctg
tctattcttcgtttaatggaagaagaggcgattaaagaaaataccctgcatgtgcaggcc
caggtaccggtcccggttgccacttacctgttaaacgaaaaacggcgctcggtgtttcat
attgaaaaacaccataacgtccatgtattgatcatccctaatcctcatatggataccccg
caatacgaagtattaagggtacgtaaggatgaatccgttgatgacgccagctatgagctg
cccatccaacaggcgaaaaccgaagaagcggtcatgcctaagtttaataaagaagccagc
aaaagagacgaacctatcgttcagggactctctgcccctaaacgggtcccggcatcggct
gaaaaagcaccggcggtaaaggccaaagaacaagtttcggaaggtgttttttccggcctg
ttcaactggctgaaaaacctgtttgctgcgcctgaaacccaggtagcagagccagctcag
gtagagaagaaaccggccaaagcacaagagcaacaggaaagacgtcctcgtcgtaaccgt
caatcacagcgtaagaatcgtcgcagcggcgataaagccgataacagagcagatagcaga
accgataacagggactctcgcgataaccgtgacaataaagagagccgtgataaccgcgac
tcccgtgacagcaacagggcaaaacagcaaggccgtaaggctgagcaaagcaaaacgcaa
aagccaaaagaagaaaaagtggccgagcgtcgtcagcgtcgcagtaaccgtaaaaagata
cgcatcaataatgccgctgctgagaccggcaacgaaaacctccctgctcgtcaggcgcca
gagacgctagtatcgaaggagaaaatagcgaaggatacaacggctaaaagcgaagaaaag
caggctgtgattacaacgcaaaccgaagctgagcttcaggcggaagaaaacgtggaaaaa
gccgcccgtgaagaaagaccaagaaaccgtcgttctccaaggcatttacgctcccatggc
caacgccgtcgccgtacaaatgccgatagcgagcagcaggccagcaacaccgagacagtc
acaagtactgaagtgagtgaagatcccgttgtttcccgctaccctgagcaagagcaggta
agcagtaaagcagctcaggaagaaagcgagactcatagtgaagcagcaccaagtgttgaa
gctcaggcaaaagaaacagcagagactcaagcagttgaagcaactaaggccgttgaaact
caaaccgatgaagcagctccagcatcggtagttgaagcccaagccgatgaagccgctcca
gcgccggtagtggaagcccaagccgatgaagccgctccagcgccggtagtggaaactcaa
gccgatgaagccgctgcaacacagctagtggaaactcaagccgatgaagccgctgcagcg
ccggtagtggaaactcaagccgatgaagcagctgcagcgccggtagtggaaactcaagcc
gatgaagccgctccagcgccggtagtggaaactcaagccgatgaagcaacaccggcagcg
gtagcaaccccggagtcaagcgctcaggaagtccagcaacaattgccgcttgaagaagaa
gtaaccactgagcaacgacaggccagcgagactcaagcgagcgcacagcccggggaaaaa
gcagattcagctgagaagaaaaccgagaagaaggcagtaaaaaggcccgttaaagccaag
aaaaaacgtctgaaaaccaatggcgacattcgtttgaaaggcaaagcctcttcacctatg
gctaagccggtaaccattaacactgttaatgagctgcccacggccttcttcgccgccgaa
gacagaaaaagagcattaacttcgggtaaaaacgccattgccgcggatgctaccagtaga
agtgccgcaggcccgactaaaccttaa
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