Thauera humireducens Piv1: C4PIVTH_0939
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Entry
C4PIVTH_0939 CDS
T09509
Name
(GenBank) DNA uridine endonuclease
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
thau
Thauera humireducens Piv1
Pathway
thau03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
thau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4PIVTH_0939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thau03400
]
C4PIVTH_0939
Enzymes [BR:
thau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
C4PIVTH_0939
DNA repair and recombination proteins [BR:
thau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
C4PIVTH_0939
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
SNU71_N
Motif
Other DBs
NCBI-ProteinID:
CAH1746104
LinkDB
All DBs
Position
C4PIVTH:967522..968304
Genome browser
AA seq
260 aa
AA seq
DB search
MLRIISLNLNGIRSAVSKGLLDWLPEQQADIVCLQELKAQAGDLSADMREPAGMKGWFHH
AEKKGYSGVGIYSRHTPDRVIEGLGIADIDAEGRFLQLDFGRLSVVSLYLPSGSSSEERL
QIKFGFMERFLPHMAALFESGQEVVVCGDWNIAHREIDLKNWKSNQKNSGFLPEERAWLS
RLFDEQGWIDVYRRLYPDATDDCYTWWSNRGQAWAKNVGWRLDYQIATPEIASTATAAAV
YKAQRFSDHAPLTIDYDWKV
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgttacgcatcatctccctcaacctcaacggcatccgctcggccgtcagcaaggggctg
ctggactggctgcccgaacaacaggccgacatcgtctgcctgcaggaactgaaggcgcag
gccggcgacctgagtgccgacatgcgcgagcccgccggcatgaagggctggttccaccac
gccgagaagaagggctacagcggcgtcggcatctacagccggcacacgccggaccgcgtg
atcgagggtctcggcatcgccgacatcgacgccgaaggccgcttcctgcagctcgacttc
ggacgactgtcggtggtgtcgctgtacctgccgtccggctccagctccgaggagcgcctg
cagatcaagttcgggttcatggagcgtttcctgccccacatggccgcgctgttcgagagc
ggccaggaggtcgtcgtatgcggcgactggaacatcgcgcaccgcgagatcgacctgaag
aactggaaatcgaaccagaagaactccggcttcctccccgaggaacgcgcctggctcagc
cggctgttcgacgaacagggctggatcgacgtgtatcgccgcctgtacccggacgcgacc
gatgactgctacacgtggtggtcgaaccgcggccaggcctgggccaagaacgtcggctgg
cgtctcgactatcagatcgccacgcccgagatcgccagcacggcgaccgccgcggccgtc
tacaaggcgcagcgcttctccgatcacgcgccgctaacgatcgactacgactggaaggtg
tag
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