Thauera humireducens Piv1: C4PIVTH_1991
Help
Entry
C4PIVTH_1991 CDS
T09509
Symbol
rpoC
Name
(GenBank) RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thau
Thauera humireducens Piv1
Pathway
thau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4PIVTH_1991 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thau03021
]
C4PIVTH_1991 (rpoC)
03400 DNA repair and recombination proteins [BR:
thau03400
]
C4PIVTH_1991 (rpoC)
Enzymes [BR:
thau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4PIVTH_1991 (rpoC)
Transcription machinery [BR:
thau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4PIVTH_1991 (rpoC)
DNA repair and recombination proteins [BR:
thau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4PIVTH_1991 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAH1747139
LinkDB
All DBs
Position
C4PIVTH:2107776..2111990
Genome browser
AA seq
1404 aa
AA seq
DB search
MKSLLADLFKQTLPNEEEFDAITIGLASPDKIRTWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRAQLLTEDDYLAKVEEYGDDFDA
VMGAEGIRELLRTLDVNLEVEKLRGDLETTNSEAKIKKFSKRLKVLEAFQQSGIKPEWMV
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVESQEPVVWDILEEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATREGVNVPGEGMLFADVAEVKRAYE
SGQIALHARITVRLKEADLGPNGERIEKINRYETTAGRAILSEILPAGLPFSVIDKPLKK
KEISKLINASFRRCGLRATVIFADQLMQFGYRLATRAGLSIAVKDMLVPTAKHDLIRAAE
AEVKEIAQQYTSGLVTDGERYNKVVDIWGRCGDQVAKAMMEQLGTEEVVNREGKTVRQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTRDGFAMKALIEGGEVVEPLRER
ILGRVTAEDVVNPDTQETAIEAGSLLDENAVDLIESLGVDEVKVRTPLTCETRYGLCAKC
YGRDLGRGSMVNAGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVEAKSGGTI
RFAGNMRYVSNAKGEKVVIARSAEVVVADDMGRERERHKLPYGAMLLVDDGATVKAGTQL
ATWDPHTRPIVTEYAGTVKFENVEEGATVAKQIDEVTGLSTLVVIDSKRRSSTGSTKGVR
PQVKLLDDNGEEVKIAGTDHAVAITFQVGSLITVKDGQQIGVGDIMARIPQESAKTRDIT
GGLPRVAELFEARAPKDAGLLAEYTGTVSFGKETKGKQRLVITEPDGTAHEFLIPKDKHL
MVHDGQVVNKGELIVDGPADPHDILRLQGISELARYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVITDPGDTRFIREEQVERSEVLDENDRMEAEGKLPAQYENVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHRSRKAQEQGM
DLGAEHAWAPVEASSETQQDIEAS
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctgctcgctgatctgttcaagcaaaccctgccgaacgaggaagagttcgat
gcgatcaccatcggcctcgcctcgcccgacaagatccgcacctggtcctacggcgaagtc
aagaagccggaaaccatcaactaccgcaccttcaagcctgaacgcgatggtctgttctgc
gccaagatcttcggcccggtcaaggattacgagtgcctgtgcggcaagtacaagcgcctc
aagcaccgcggcgtgatctgcgagaagtgcggcgtcgaagtgaccctgtcgaaggtgcgc
cgcgagcgcatgggccacatcgaactggcctcgccggtcgcccacatctggttcctgaag
agcctgccgagccgtctcggcatggtgctcgacatgaccctgcgcgacatcgagcgcgtg
ctgtacttcgaagccttcgtcgtcgtcgagccgggcatgaccccgctcaaccgcgctcag
ctgctgaccgaagacgactacctcgccaaggtcgaggagtacggcgacgatttcgacgcc
gtgatgggcgccgagggcatccgcgaactgctgcgcacgctcgacgtgaacctcgaggtc
gagaagctgcgtggcgacctggaaaccaccaactccgaagccaagatcaagaagttctcg
aagcgcctgaaggtgcttgaggccttccagcagtccggcatcaagccggagtggatggtg
ctggaagtgctgccggtgctgccgcccgacctgcgtccgctcgtgccgctggacggtggc
cgcttcgccacctccgacctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgc
ctcaagcgcctgctcgagctcaaggcgcccgacatcatcgtgcgtaacgaaaagcgcatg
ctgcaggaagccgtcgactcgctgctcgacaacggccgtcgcggcaaggcgatgaccggc
gccaacaagcgcccgctgaagtcgttggccgacatgatcaagggcaagggcggccgtttc
cgccagaacctgctcggcaagcgcgtcgactactcgggccgttcggtgattaccgtgggc
ccgcagctcaagctgcaccagtgcggcctgcccaagctgatggcgctggaactgttcaag
cccttcatcttcaacaagctcgagctgatggggctggccacgaccatcaagcaggccaag
aagatggtggagtcgcaggagccggtggtgtgggacatcctcgaagaggtgatccgcgag
catccggtgctgctgaaccgcgcaccgacgctgcaccgcctcggcatccaggctttcgag
ccggtgctgatcgaaggcaaggcaatccagctccatccgctggtctgcgtcgcgttcaat
gccgacttcgacggcgaccagatggccgtccacgtcccgctgtcgctcgaggcgcagatg
gaagcgcgtacgctgatgctggcttccaacaacgtgctctcgcctgccaacggtgagccg
atcatcgtgccgtcgcaagacatcgtgctcggcctgtactacgcgacccgtgagggcgtg
aatgtaccgggcgaaggcatgctgttcgccgacgtggcggaggtcaagcgcgcctacgaa
tccggccagatcgcgctgcatgcgcgcatcaccgttcgcctgaaggaggccgatctcggc
cccaacggcgagcgcatcgagaagatcaaccgctacgagacgaccgccggccgcgcgatc
ctgtcggagatcctgccggcaggcctgccgttcagcgtcatcgacaagccgctgaagaag
aaggagatctcgaagctgatcaacgcctccttccgccgctgcggactgcgcgcgacggtg
atcttcgccgaccagctgatgcagttcggctaccgcctggcgacgcgtgccggtctgtcg
atcgcggtcaaggacatgctggtgccgaccgccaagcacgatctgatccgtgcagccgaa
gccgaggtcaaggagatcgcccagcagtacacctccggtctggtgaccgatggtgagcgc
tacaacaaggtcgtggatatctgggggcgctgcggcgaccaggtcgccaaggcgatgatg
gagcagctcggcaccgaggaagtggtcaaccgcgaaggcaagaccgtccgtcaggagtcg
ttcaattcgatctacatgatggccgactcgggcgcgcgcggttccgcggcgcagatccga
cagctggccggcatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccg
atcacgacgaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacgcacggc
gcccgtaagggtctggccgacaccgcactgaagaccgcaaactcgggttacctgacgcgt
cgtctggtcgatgtcacgcaggatctggttgtcatcgaggacgattgtggcacgcgcgac
ggtttcgcgatgaaggcgctgatcgagggcggtgaagtcgtcgagccgctgcgtgagcgc
atcctgggccgtgtcacggcggaggacgtcgtgaatcccgatacgcaggaaaccgcgatc
gaggcgggcagcctgctcgacgagaatgcggtcgacctaatcgagagtctgggtgtagac
gaggtcaaggtgcgtacgccgctgacctgcgaaacgcgctacggcctgtgtgccaagtgc
tatggccgcgacctcggccgcggttcgatggtcaacgccggtgaggcggtgggcgtcatc
gccgcgcagtcgatcggcgagccgggcacccagctgaccatgcgaaccttccacgttggt
ggtgcggcctcgcgggctgcggctgccagcggcgtcgaagccaagtccggcggcacgatc
cgtttcgccggcaacatgcgctacgtctccaacgccaagggcgagaaggtcgtcatcgcg
cgctcggccgaggtcgtggtcgccgacgacatggggcgcgaacgcgagcgtcacaagctg
ccctacggcgcaatgctgctggtcgacgacggcgcgaccgtcaaggcgggcacgcaactc
gccacctgggacccgcatacccgtccgatcgtgaccgagtatgccggtaccgtgaagttc
gagaacgtcgaggaaggcgcgaccgtcgccaagcagatcgacgaagtgaccggcctgtcg
acgctggtggtcatcgactcgaagcggcgttccagcaccggcagcaccaagggtgtgcgt
ccgcaggtcaagctgctggacgacaacggcgaagaggtcaagatcgcaggtaccgatcac
gccgtggcgatcaccttccaggtcggttcgctgatcaccgtgaaggacggccagcagatc
ggcgtcggtgacatcatggcgcgtattccgcaggagtctgcaaagacgcgcgacatcacc
ggtggtctgccgcgcgtggcggaactgttcgaagcacgcgcaccgaaggatgccggcctg
ctggcggagtacaccggtacggtgtccttcggcaaggaaaccaagggcaagcagcgtctc
gtcatcaccgagcccgacggcacggcacacgagttcctgatcccgaaggacaagcacctg
atggtccacgatggccaggtggtgaacaagggcgagctcatcgtagacggcccggccgac
ccgcacgacatcctgcgcctgcaggggatcagcgagctggcgcgctacatcatcgatgag
gtgcaggacgtctatcgtctgcagggtgtgaagatcaacgacaagcacatcgaggtgatc
gtgcgccagatgctgcggcgcgtggtcatcaccgatccgggcgacacccgcttcatccgc
gaggagcaggtcgagcgttcggaagtgctggacgagaacgaccgcatggaagccgaaggc
aagctgccggcgcagtacgagaacgtgctgctcggtatcaccaaggcttcgctgtcgacc
gactccttcatctccgcggcgtccttccaggagacgacgcgcgtgttgaccgaggcggcg
atcatgggcaagcgcgacgaactgcgtggcctgaaggaaaacgtgattgtcggccgtctg
atcccggccggtacgggtctcgcctaccaccgcagccgcaaggcgcaggagcaaggcatg
gatctgggggccgagcacgcttgggcgcctgtcgaagcttcgagcgaaacacagcaggac
atcgaggccagttga
DBGET
integrated database retrieval system
