Thauera humireducens Piv1: C4PIVTH_2230
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Entry
C4PIVTH_2230 CDS
T09509
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thau
Thauera humireducens Piv1
Pathway
thau03030
DNA replication
thau03430
Mismatch repair
thau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4PIVTH_2230 (dnaE)
03430 Mismatch repair
C4PIVTH_2230 (dnaE)
03440 Homologous recombination
C4PIVTH_2230 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thau03032
]
C4PIVTH_2230 (dnaE)
03400 DNA repair and recombination proteins [BR:
thau03400
]
C4PIVTH_2230 (dnaE)
Enzymes [BR:
thau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C4PIVTH_2230 (dnaE)
DNA replication proteins [BR:
thau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C4PIVTH_2230 (dnaE)
DNA repair and recombination proteins [BR:
thau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C4PIVTH_2230 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAH1747378
LinkDB
All DBs
Position
C4PIVTH:2351833..2355348
Genome browser
AA seq
1171 aa
AA seq
DB search
MIADPNSSSLTPHQPRFVHLRLHSEFSITDGIVQIDQAVAAAADDGMPALGISDLANLFG
MVKFYKTARGKGVKPVVGVDAWIQNEAERDKPHRVLLICKNRVGYGQLCELLTRAYLDNK
YRGRAEMRREWFENGAASELLCLSGAMHGDIGVAIAAGNRELATQLAADWSRLFPDAFYL
EIQRAGHPGTEAYIRHALDIAGELGIPVVATHPVQFLKREDFRAHEARVCIAQGYVLADK
RRPRDFTEEQYLKSQAEMCELFADIPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGMT
LDDFLVQEAKAGLEKRLVQLYPQPEEREKQRPRYEERLKFETDTIIQMGFPGYFLIVADF
IRWGKKNGVPVGPGRGSGAGSLVAYSLDITDLDPLEYALLFERFLNPERVSMPDFDIDFC
QDNRYRVIEYVRERYGKEAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLIPIEG
AKPVSLNKAYEMEPQIGEMMKDGNDGEAVQTLWGLAQPLEGLTRGVGMHAGGVLIAPGKL
TDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYIARMTGSRPD
LMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPGPLGS
GMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR
AMGKKKPEEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVTYH
TAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTVANGIAVLPPDVNESDYRFVPVDRKT
IRYGLGAVKGVGEPAVRAILAAREKAGAFRDLFEFCERVDRRMVNRRVIEALIRAGAMDT
LSGHQGLDRAQLMATVALAMEAAEQAAANAMQGGLFDLMPEAAGAAPAFAKIRPWTERER
LKEEKLAIGFFLSGHPFNSFKGEVRRFVRRTLAQIEPSRDITMLAGVVMETRTKMGNRGK
MAFVLLDDGTQPREVMVYSEVLDANRGKIVTDEVLVVEAKVSNDEFSGGLRIIADRLLTL
GEARSRFARALQLRINGEVGAGGGAAATAGKLQTLLEPFREGGCPIRVTYRNAAAEADLP
FGDGWRVRLDDALLESLREWLPPESVEVIYP
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgattgccgacccgaattcttcctcccttacgccgcaccagccgcgcttcgtccatctt
cgccttcactccgagttctcgatcaccgacggcatcgtccagatcgaccaggccgttgcg
gccgctgccgatgacggcatgccggcgctcggcatctccgacctcgccaacctgtttggc
atggtcaagttctacaagaccgcccgcggcaagggcgtcaagccggtcgtcggtgtcgat
gcctggatccagaacgaagccgagcgcgacaagccccaccgcgtcctgctgatctgcaag
aaccgcgtgggctatggccagctatgcgaactgctgacacgcgcctatctcgacaacaag
taccgcggccgtgccgagatgcggcgcgagtggttcgagaacggcgccgccagtgagctc
ttgtgcttgtcgggcgcgatgcacggcgacatcggcgtggcgattgccgcgggcaatcgc
gagctggcaacacaactcgcggccgactggtcgcggctgtttcccgatgcgttctacctc
gagatccagcgcgcaggccatccgggtaccgaggcgtacatccgtcacgcgctcgacatc
gccggcgaactggggattccggtggtggcgacccaccccgtgcagttcctcaagcgcgag
gacttccgggcgcacgaggcgcgggtgtgcatcgcccagggctatgtgctggccgacaag
cgccggccgcgcgacttcactgaggagcagtacctcaagagccaggcagagatgtgcgag
ctgttcgccgacatccccgaggcgctcgagaacgcggtcgagatcgcccgccgttgctcg
ctgacggtgcagttgggcaagaacttcctgccgctgttcccgacgccggaaggcatgacg
ctggacgacttcctggtgcaggaggccaaggccggcctcgagaaacgtctcgtacaactc
tatccccaacccgaggagcgcgagaagcaacgtcctcgctacgaggaacggctcaagttc
gagaccgacaccatcatccagatgggcttccccggctacttcctgatcgttgccgacttc
atccgctggggcaagaagaacggcgtgccggttggtccgggccgcggctcgggcgccggc
tcgctggtggcctattcgctcgacatcaccgacctcgacccgctggagtacgcgctgctg
ttcgagcgcttcctgaacccggagcgggtgtcgatgcccgacttcgacatcgacttctgc
caggacaaccgttaccgcgtcatcgagtacgtgcgcgagcgctatggcaaggaggcggtg
agccagatcgccaccttcggcacgctggcctccaaggccgtggtgcgcgacgtcggccgg
gtgctcgacatgccctatggcctgtgcgaccgcctgtccaagctgatcccgatcgaaggg
gccaagcccgtctcgctgaacaaggcctacgagatggagccgcagatcggcgagatgatg
aaggacggcaacgacggcgaggccgtccagaccctgtggggcctggcgcagccgctcgag
ggcctgacccgcggcgtcggcatgcacgccggcggcgtactgatcgcgcccggaaagctc
accgacttctgcccgctgtacatcgccgatggcgatgacgccacgccggtgtcgcagttc
gacaaggacgacgtggaagccgtcggcctcgtgaagttcgacttcctcggcctgcgcaac
ctcaccatcatcgagctggcgctggagtacatcgcgcgcatgaccggcagtcggcccgac
ctgatgagcctgggcttcgaagatccggccgcctaccagatcctgaaggacgccaacacc
acggcgatcttccaggtcgaatcggacggcatgaagaagctgctcaagaagctcgccccc
gaccgcttcgaggacatcatcgcggtgctcgcgctctaccggccgggcccgctgggttcg
ggcatggtggacgacttcatcctgcgcaagaagggccagcaggagatcgactacttccac
cccgacctgaaagcctgcctggagccgacctacggcgtcatcgtgtaccaggaacaggtg
atgcagatctcccagatcatcgggggctacaccctgggcggcgccgacatgctgcgccgt
gcgatgggcaagaagaagcccgaggagatggccaagcaccgcgccaccatcgccgagggc
gccaagcagaagggctacgatccggcgctggccgagcagctcttcgatctgatgaccaag
ttcgcggagtacggcttcaacaagtcgcacaccgccgcctacgcggtcgtcacctaccac
accgcctggctcaaggcccatcactgcgcggccttcatggcggcgacgatgtcgtctgac
ctggacaacaccgataccgtcaagatcttctacgaggacacggtcgccaacggcatcgcg
gtgctgccgccggacgtgaatgaatcggactaccgcttcgtgccggtggaccgcaagacg
atccgctacggcctgggcgcggtgaagggggtgggcgagccggcggtgcgggcgatcctg
gcggcgcgcgagaaggcgggggccttccgcgacctgttcgagttctgcgagcgcgtcgac
cggcgcatggttaaccgccgcgtcatcgaggcgctgatccgcgctggcgcgatggacacg
ctgtccggccaccagggcctggaccgcgcccagctgatggccaccgttgcgctggcgatg
gaggcggccgagcaggctgcagcgaatgcgatgcagggcgggctgttcgacctgatgccg
gaagctgcgggcgcagcgcctgcattcgcgaagatccggccgtggaccgagcgcgagcgg
ctgaaggaagagaagctcgcgatcggcttcttcctgtcgggccatcctttcaatagcttc
aagggcgaggtgcgccgcttcgtacgccgcacgctggcgcagatcgagccctcgcgcgac
atcaccatgctggcaggcgtggtcatggagacgcggacaaagatgggcaaccgcggcaag
atggccttcgtgctgctcgatgacggcacccagccgcgtgaggtgatggtctattccgaa
gtgctggacgccaaccgcggcaagatcgtcaccgacgaggtgctggtggtcgaggccaag
gtcagcaacgacgagttctcggggggcttgcgtatcatcgccgaccgcctgctgacgctg
ggcgaggcgcggagccgttttgcgcgcgcgctgcagctgcgcatcaatggcgaggtcggg
gcgggcggaggcgcggctgcgacagccggcaagctgcagaccctgctcgagcctttccgt
gaaggtgggtgcccgatccgggtgacgtatcgcaacgccgcggccgaggccgacctgccc
ttcggcgacggttggcgcgtgcggctggacgacgccttgctggaaagcctgcgcgaatgg
ttgccgcccgagtcggtggaggtgatctacccctga
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