Thermofilum adornatum 1910b: N186_02250
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Entry
N186_02250 CDS
T02802
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
thb
Thermofilum adornatum 1910b
Brite
KEGG Orthology (KO) [BR:
thb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thb03016
]
N186_02250
Enzymes [BR:
thb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N186_02250
Transfer RNA biogenesis [BR:
thb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N186_02250
Prokaryotic type
tRNA splicing ligases
N186_02250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
AGT34838
UniProt:
S5ZCV4
LinkDB
All DBs
Position
complement(398930..400378)
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AA seq
482 aa
AA seq
DB search
MAPPLRKITDYLWEIPQKYKPGMRVPGLVIADEVLIGKMKEDLTLEQVANVAVLPGIYKY
SIVLPDGHQGYGFPIGGVAAFDANEGVLSPGGVGYDINCGVRVLATNLMEQEVRPKLREL
AETLFRKIPSGLGSTSGLRLSFSELDRVLEEGVEWAIERGYGWPEDPEHIEERGRMEGAD
AGAVSNEAKERGNNQLGTLGSGNHFLEVQRVDKIYDPEVAKYFGIEREGQVTVMIHTGSR
GLGHQVASDYLKIMERLVRKYNMPLPDRELVSVPATAPEAEKYFAAMKAAANFAWTNRQV
ITHWVRESFRQVFKTDPDKLGLKIIYDVAHNIAKLEEHVVDGKRVKVYVHRKGATRAFPP
GHPEIPQDYKTIGQPVLIPGSMGTASYILVGTPKAMELTFGSSPHGAGRMQSRAEARRQV
RGQEIKAELENRGIVVRAASLAVVAEEAPDAYKDVDRVVAVADAVGFVKKVVRMTPIAVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggctccaccattaagaaagataactgactacttgtgggagatcccacagaagtacaag
cctggaatgagggttccaggtctcgtaatagctgacgaagtgctaataggcaaaatgaag
gaagacctcacactcgaacaagtggcaaacgttgctgtcttgccgggaatatacaagtat
tcgattgttctgccagacggacaccagggctacgggttccccattgggggcgtagcggca
ttcgacgcgaacgagggcgtgttgagcccgggaggagtcggatacgacataaactgtgga
gtgagggttctcgcgacaaacctaatggagcaggaggttaggccaaagctacgcgagctg
gcagagacacttttcaggaagatcccatctggtctgggaagcacaagtggcttgaggctc
agcttttcagagctagacagggttctagaagagggagtagaatgggccatagagaggggc
tatggctggccagaggatcccgaacacatagaggagcgcggcagaatggagggtgcagac
gccggcgcggtctcaaacgaggcaaaggagaggggcaacaaccagcttggaaccctgggt
agtggcaaccacttcctcgaagtccaaagggtagacaagatttacgaccccgaggtcgcg
aaatactttggcatcgagagagagggacaagtaacagtgatgatccatactggttcgagg
ggcctagggcaccaggtagccagcgactacctcaagataatggagaggctcgtcaggaaa
tacaacatgccgctcccagacagggagctagtctctgtccccgcaaccgctcccgaggcc
gaaaaatacttcgcggcaatgaaggcagccgccaacttcgcttggacaaacaggcaggtg
atcactcactgggtgcgtgaaagctttaggcaggtcttcaagactgatccagacaagctc
ggactaaaaatcatatacgacgttgcacacaacattgctaagctcgaggaacacgttgtc
gatgggaaacgtgtaaaggtctacgtccacaggaagggggcgacccgcgccttcccgccc
ggtcacccggagatcccacaggactacaagactataggccagccagtccttatccctgga
tcaatgggcacagctagctacatacttgttgggacgcccaaagccatggagctgactttc
ggctcttcgccgcacggggccggcaggatgcagagcagggcagaggctaggaggcaggtc
aggggacaagagatcaaggccgagctcgagaacaggggcatagtcgttagggctgcgagc
ctggccgtcgttgcggaagaggcgccagacgcatacaaggatgtggacagggttgtcgcc
gttgcagacgctgttgggttcgtaaagaaagtagtgaggatgacgccgatagctgtggtt
aaggggtaa
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