Thermus sp. CCB_US3_UF1: TCCBUS3UF1_15260
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Entry
TCCBUS3UF1_15260 CDS
T01866
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thc
Thermus sp. CCB_US3_UF1
Pathway
thc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TCCBUS3UF1_15260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thc03021
]
TCCBUS3UF1_15260
03019 Messenger RNA biogenesis [BR:
thc03019
]
TCCBUS3UF1_15260
Transcription machinery [BR:
thc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TCCBUS3UF1_15260
Messenger RNA biogenesis [BR:
thc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TCCBUS3UF1_15260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
NACHT
AAA_22
AAA_24
Spore_III_AA
ATPase_2
ARMH5
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
AEV16567
LinkDB
All DBs
Position
complement(1520868..1522148)
Genome browser
AA seq
426 aa
AA seq
DB search
MRKKTEIQETPLSYQELSAKILPELHLLAQEAGIENYKRMKKDQLIMALLERQTQGEGLQ
LVKGYLEVSPDGYGFLTENLYNLESRVAIVSAGLIRQYALRSGDYVVGRVRPPRENERYG
TLLKVEAVNDLDPEAAKNRPRFDELIPQFPDRQIRLETTPDELSTRVIDLLAPIGRGQRG
LIVAPPKAGKTTLLKKIANAVLKNEPDIKVIVLLIDERPEEVTDFRESVQGAEVIASTFD
EPPQNHIRVAEFVHERAKRIVEEGGHVMILLDSITRLARANNLVTPPTGRTLSGGLDSAA
LYFPKRFLGAARNIRGGGSLTILATALVETGSRMDDVIFEEFKGTGNMELHLSRRLEERR
IFPAIDILKSGTRREELLLGEEVVHKMWLLRKVLADMDPAEAMEMLLARLGRTKSNKEFL
ASLAAR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagaagacagagatccaggaaacgcccctttcctaccaggagctttcggccaaa
atcctgccggagctccacctcctggcccaggaggcgggcattgagaactacaagcggatg
aagaaggaccagctgattatggccctcctggaacggcagacccaaggggagggcctccag
ctggtcaaggggtacctggaggtaagccccgacggctatggcttcctgacggaaaacctt
tacaacctggagtcccgggtggccatcgtgtccgctgggctcatccgccagtacgccctg
cggagcggggactacgtggtgggccgggtgcgccccccccgggagaacgagcgctacggc
accctcctcaaggtggaggcggtcaacgacctggaccccgaggccgccaagaaccgcccc
cgttttgacgagctcattccccagttccccgaccggcagatccgtctggagaccacgccg
gacgagctttccacccgggtgattgacctcctggcccccattggccgggggcagcggggg
ctcatcgtggccccgcccaaggcggggaagaccaccctgctcaagaagatcgccaacgcc
gtcctcaagaacgagccggacatcaaggtcatcgtcctcctgattgacgagcggcccgag
gaggtgacggacttccgggaaagcgtccagggggccgaggtcatcgccagcacctttgac
gagccaccccagaaccacatccgggtggcggagttcgtccacgagcgggccaagcgcatc
gtggaggagggagggcacgtgatgatcctcctggactccatcacccgcctggcccgggcc
aacaacctggtcaccccgcccacggggcgcaccctttccgggggtctggactccgcggcc
ctttacttccccaagcgcttcctgggggcagcccggaacatccgtgggggagggagcctc
accatcctggccaccgccttggtggagacgggaagccgcatggacgacgtgatctttgag
gagttcaagggcacgggcaacatggagctccacctctcccgccgtctggaggagcggcgc
atcttcccggccatcgacatcctcaagtcggggaccaggcgggaggagcttcttctgggt
gaggaggtggtgcacaagatgtggctgctccgcaaggtgttggcggacatggatccggcg
gaggccatggagatgctcctggcccggcttggccgcaccaaaagcaacaaggaattcctg
gcctccttggcggcccgctga
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