Thermus sp. CCB_US3_UF1: TCCBUS3UF1_2960
Help
Entry
TCCBUS3UF1_2960 CDS
T01866
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
thc
Thermus sp. CCB_US3_UF1
Brite
KEGG Orthology (KO) [BR:
thc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thc03016
]
TCCBUS3UF1_2960
Enzymes [BR:
thc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TCCBUS3UF1_2960
Transfer RNA biogenesis [BR:
thc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TCCBUS3UF1_2960
Prokaryotic type
tRNA splicing ligases
TCCBUS3UF1_2960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEV15345
LinkDB
All DBs
Position
323497..324927
Genome browser
AA seq
476 aa
AA seq
DB search
MRWEKIAPYTYRIPRQGKMRVDAVFFASEEILRDLEAENYASLAQLANVATLPGIVEPAL
AMPDIHWGYGFPIGGVAAFDPEAGGVVSPGGVGFDINCGVRLLVSALTLEDLLPRQRELA
DALFRLVPSGVGSERKDVRFSKKELKEILKEGAGWLVRKGFGHPEDLRFIESEGRLPWAN
PDKVSERAFERGAPQIGTLGSGNHFLEVQYVDQVYDLEAAEAYGLFPNQIAVLIHTGSRG
LGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIRSPEGEDYLQAMAAAANFAFANRQLI
AHFVREAFEAVGFTPREHGLRVLYDLAHNNAKFEEHGGRRVLVHRKGATRAFGPGYPEIP
REYQRVGQPVLVPGDMGRYSYVLAGTEGAMAHAFGSSCHGAGRKMSRHQAKRVARERNLV
KELAERGILVRAATRATVDEEMPEAYKDVSSVVEAVQGAGIGKKVARLRPLIVVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgggaaaagatcgccccctacacctaccgcatccccaggcaggggaagatgcgg
gtggatgccgtcttcttcgcctccgaggagatcctaagggacctcgaggccgagaactac
gcttccttagcccagctggccaacgtggccaccctgcccggcatcgtggagccagccttg
gccatgcccgacatccattggggctacggttttcccatcggcggggtggcggcctttgac
ccggaggccgggggggtggtgagccctgggggggtggggtttgacatcaactgcggggtc
cggctcctggtctcggccctcaccctggaggaccttttgccccggcaaagggagctggcc
gacgccctcttccgcctggtgccctcgggggtggggagcgaacgcaaggacgtgcgcttc
agcaaaaaggagctcaaggagatcctcaaggagggggcagggtggctggtgcgcaagggg
tttggccaccctgaggacctgcgcttcatagagtcggaaggacgcctgccctgggccaac
ccggacaaggtttccgagcgagcctttgagcgcggggcccctcagatcggtaccctggga
agcggcaaccacttcctggaggtgcagtatgtggaccaggtctacgacctggaagcggct
gaggcctacgggcttttcccaaaccagatcgccgtcctcatccacacgggcagccgcggc
ctcggccaccaggtctgccaggactacgtggagcgcttcttgaaggttgccccgcggtac
gggattgaactggtggacaagcagctggccgccgcccccatccggagccccgagggggag
gattacctccaggccatggccgccgccgccaacttcgccttcgccaaccgccagctcatc
gcccacttcgtgcgcgaggcctttgaggccgtgggcttcactcctagggagcatgggctt
agggtcctttacgacctggcccacaacaacgccaagtttgaggagcatgggggaaggcgg
gtcctggtccaccgcaagggggctacccgggccttcggccctggctaccccgagatcccc
cgggagtaccagcgggtgggccagccggtcctggtccccggggacatgggccgctactcc
tacgtcctggcggggacggagggggccatggcccacgcctttggctccagctgccacggg
gccgggcgcaagatgagccgccaccaggccaagcgggtagcccgggagcgcaacctggtc
aaggagctggccgagcgggggatcctggtgcgggccgccacccgggccacggtggacgag
gagatgcccgaggcctacaaggacgtctcctcggtggtggaggcggtgcagggggcaggg
atcggcaagaaggtggcccgcctccgccccctcatcgtggtcaagggctaa
DBGET
integrated database retrieval system
