Thermus sp. CCB_US3_UF1: TCCBUS3UF1_420
Help
Entry
TCCBUS3UF1_420 CDS
T01866
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thc
Thermus sp. CCB_US3_UF1
Pathway
thc03030
DNA replication
thc03430
Mismatch repair
thc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TCCBUS3UF1_420
03430 Mismatch repair
TCCBUS3UF1_420
03440 Homologous recombination
TCCBUS3UF1_420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thc03032
]
TCCBUS3UF1_420
03400 DNA repair and recombination proteins [BR:
thc03400
]
TCCBUS3UF1_420
Enzymes [BR:
thc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TCCBUS3UF1_420
DNA replication proteins [BR:
thc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TCCBUS3UF1_420
DNA repair and recombination proteins [BR:
thc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TCCBUS3UF1_420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AEV15092
LinkDB
All DBs
Position
35019..38687
Genome browser
AA seq
1222 aa
AA seq
DB search
MASRLKFAHLHQHTQYSLLDGAAKLTDLLKWVKEVSPEEPALAITDHGNLFGAIEFYKKA
TAMGVKPILGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFRGYQNLVRLASRAYLEG
FYEKPRIDREILREHAEGLIALSGCLGAEIPQFILQDRLDLAEARLQEYLSIFGDRFFLE
LQNHGLPEQQKVNAVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAVQSKTTLDDPE
RWRFPCDEFYVKTPEEMRAAFPEAEWGDEPFDNTVVIARMCQVDLPIGDRMVYRIPRFPL
PEGRTEAQYLRELTFLGLLRRYPDRITEGFYREVFRRLGKLPPHGDGVALAQALAQVEEG
AWEAFLSGLPPLEGVGEWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARQNGISV
GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIEYV
RRRYGADRVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLAEAIQ
VVPELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAQEPLTDLVPLMRDQEGRP
VTQYDMGAVEALGLLKMDFLGLRTLTFLDEAKRILKESRGVELDYDRIPLDDPKTFDLLS
RGETKGVFQLESGGMTSTVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVAY
PEFPHAERYLRPILEETYGIPVYQEQIMQIASAVAGYSLGEADLLRRAMGKKKLEEMQRH
RERFVRGAKERGIPEEEAHRLFDMLEAFANYGFNKSHAAAYSLLAYQTAYVKAHYPVEYM
AALLSVERHDSDKVAEYIRDARSLGIPVLPPDINRSGFDFKVVGGEILFGLSAVKNVGEG
AASAILQERERGGPYRSLGDFLKRLDEKVVNKRTLESLVKAGAFDAFGDRARLLASLEPL
LRWAAESRERARSGMMGLFAEVEEPPLAEASPLDEITRLRYEKEALGIYVSGHPVLRYPG
LREVASCALEDLPHFAHDLPPRARVLLAGMVEEVVRKPTKSGGMMARFVLSDETGALEAV
AFGRAYEGVSPKLKEDTPLLVLAEVEREEGGVRVMAQAVWTYEEVAEAPKALEVEADHAL
LDEKGVTLLKSLLDEHPGPYPFYVRVQGPFGEALFALKEVRASEEALRALEAEGFRAYLV
PDREVFLQGNGGNGSKEEAVPF
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaggctcaagttcgcccacctgcaccagcacacccagtactcccttctggac
ggggcggccaagctcaccgatctcctcaagtgggtgaaggaggtctcccccgaggagccg
gccctggccatcaccgatcacggcaacctcttcggggccatagagttctacaaaaaggcc
acggccatgggggtgaagcccatcctgggctacgaggcctacgtggcggcggaaagccgc
tttgaccgtaagcggggcaagggcctggacgggggctacttccaccttaccctcctggcc
aaggacttccggggctaccagaacctggtgcgcctggccagccgggcctacctggagggc
ttttacgagaagccccgcattgatcgggagatcctgagggagcacgccgaggggctcatc
gccctctccgggtgcctgggggcggagatcccccagttcatcctgcaagaccgcctggac
ctggccgaggcccggcttcaggagtacctgtccatcttcggcgaccgcttcttccttgag
ctccagaaccacggcctccccgagcagcagaaggtgaacgccgtcctcaaggagtttgcc
cgcaagtacggcctggggatggtggccaccaacgacggccactatgtgcgcaaggaggac
gcccgggcccacgaggtcctcctggccgtccagtccaagaccaccctggacgaccccgag
cgctggcgcttcccctgcgacgagttctacgtcaagaccccggaggagatgcgggccgca
tttcctgaggccgagtggggggatgagccctttgacaacactgtggtcatcgcccgcatg
tgccaggtggacctccccatcggggacaggatggtctaccgcatcccccgtttccccctc
cccgaggggcggaccgaggcccagtacctgcgggagctcacctttttgggccttttgcgc
cgctaccccgaccggatcaccgaggggttttaccgggaggtcttccgccgcctgggcaag
ctccctccccatggggacggggtggccttggcccaagccctggcccaggtggaggagggg
gcctgggaggccttcctttcgggccttccgcccttggagggggtgggggagtggacggcg
gaggccatcctccaccgggccctttacgagctttccgtcattgagcgcatgggctttccc
ggctactttctcatcgttcaggactacatcaactgggccaggcagaacggcatctccgtg
ggcccaggccggggttcggcggcggggagcctggtggcctacgccgtggggatcaccaac
attgaccccttgcgtttcggcctcctctttgagcgcttcctcaaccccgagcgggtctcc
atgcccgacatcgacaccgacttctccgaccgggagcgggaccgggtgatcgagtacgtg
cgcaggcgctacggggccgaccgggtggcccagatcggtaccttcggcagcctggcctcc
aaggcggccctgaaggacgtggcccgggtctacggcatcccccataagaaggcggaggag
ctggccaagctgatccccgtgcagttcggcaagcccaagcccttggccgaggccatccag
gtggtgcccgagctccgggcggagatggaaaaagaccccaaggtgcgggaggtcctcgag
gtggccatgcgcctggagggcctgaaccgccacgcttcggtccacgccgccggggtggtg
atcgcccaggaacccctcacggacctggtccccctcatgcgggaccaggagggccgcccc
gtgacccagtacgacatgggggcggtggaggccctgggccttttgaagatggacttcctg
ggcctgcgcacccttaccttcctggacgaggccaagcgcatcctgaaggagtcccggggg
gtggagctggactacgaccgcatccccctggacgaccccaagacctttgacctcctttcc
cggggggagaccaagggggtcttccagctggagtccggggggatgacctccacggtgcgg
ggcctgaagccccggcgcctggaggacatcatcgccctggtctccctctaccgcccgggg
cccatggagcacatccccacctacatccgccgccaccacggccaagaacccgtggcctac
ccggagtttccccacgcggaacgctacctgaggcccatcctggaggagacctacggcatc
cccgtgtaccaggagcagatcatgcagatcgcctcggcggtggcggggtactccctgggg
gaggccgacctcctgcgccgggccatggggaagaagaagctggaggagatgcagcgccac
cgggagcgcttcgtgcgcggggccaaggagcggggcatccccgaggaggaggcccaccgc
ctctttgacatgctggaggcctttgccaactacggcttcaacaagagccacgccgccgcc
tacagcctcctcgcctaccagaccgcctacgtgaaggcccactaccccgtggagtacatg
gccgccctcctcagcgtggagcgccacgattcggacaaggtggcggagtacatccgggat
gcccgctccttgggcatccccgtccttccccccgacatcaaccgctcgggctttgacttc
aaggtggtgggcggggagatcctcttcggcctctcggcggtgaagaacgtgggcgagggg
gcggcctcggccatcctccaggagcgggagcggggggggccctataggagcctgggggac
ttcctcaagcgcctggacgagaaggtggtgaacaagcgcaccctggagtccctggtcaag
gcgggggcctttgacgcctttggggaccgggcccggcttctggcctccttggaacccctc
ctccgctgggcggcggagagccgggagcgggcccgctcggggatgatgggcctcttcgct
gaggtggaagagcctcccttggcggaggcttcgcccctggacgagatcacccggctgcgc
tacgagaaggaggccctcggcatctacgtttccggccaccctgtcctccgctaccccggc
ctgcgggaggtggccagctgcgccctcgaggacctcccccacttcgcccacgacctccct
ccccgggcccgggtcctcctggcaggcatggtggaggaggtggtgcgcaagcccaccaag
agcggggggatgatggcccgcttcgtcctctccgacgagacgggggccctggaggcggtg
gcctttggccgggcctacgagggggtttcccccaagctcaaggaggacacccccctcttg
gtcctggccgaggtggagcgggaggaagggggggtgcgggtgatggcccaggcggtctgg
acctacgaggaggtggccgaagcccccaaggccctggaggtggaggcggaccacgccctt
ttggacgagaagggggtaacccttctcaaaagcctcctggacgagcatccaggcccctat
cccttctacgtgcgggtgcaggggcccttcggcgaggcccttttcgccctgaaggaggtc
cgggcctcggaagaggcccttagggccttggaggccgagggcttccgcgcctacctggtg
cccgaccgggaggtcttcctccaggggaacgggggaaacggcagcaaggaggaggcggtc
cccttctag
DBGET
integrated database retrieval system
