Thermus sp. CCB_US3_UF1: TCCBUS3UF1_8290
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Entry
TCCBUS3UF1_8290 CDS
T01866
Name
(GenBank) PAS/PAC sensor protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
thc
Thermus sp. CCB_US3_UF1
Pathway
thc03030
DNA replication
thc03430
Mismatch repair
thc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TCCBUS3UF1_8290
03430 Mismatch repair
TCCBUS3UF1_8290
03440 Homologous recombination
TCCBUS3UF1_8290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thc03032
]
TCCBUS3UF1_8290
03400 DNA repair and recombination proteins [BR:
thc03400
]
TCCBUS3UF1_8290
Enzymes [BR:
thc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TCCBUS3UF1_8290
DNA replication proteins [BR:
thc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TCCBUS3UF1_8290
DNA repair and recombination proteins [BR:
thc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TCCBUS3UF1_8290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
PAS_8
PAS
RNase_H_2
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AEV15876
LinkDB
All DBs
Position
complement(808387..810276)
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AA seq
629 aa
AA seq
DB search
MREAWRFLGALLLGLLLVGGTLGVGFFLLLQGEEALGRELLRVAREKLPLLLFLAFLFAS
VLAALLHPLFLGYLAATRALGQEAEVLLANPGHRLRLRGPFELQALAGLINRLAAEKEAL
EKEVAARVAEAKALLEGERQRLSALIGHLPQGVVLANPKGQVLLYNAQARRLLGEGLGAG
KSLFALLDRGLLVHALALPEERFLAQGPKGPLRLQAVPLEGEGGFLVLLEEAKEAEGAEE
ASLHRLKDKLSGLKALVEALEGEVPPGLAPLVATAKAAAQELAGLVQGLEAQPQVAEVLA
QDLLPLLAEALEREAGLSPGWSLGENAHGWAVRADTYALARGLAATLAAEEEVFLQGERE
GNLFRLTLVLPHPAPEPHPLLQQAVARAGGNLWREGARLYLLLPALKAPRLPAPEGPPPR
AEVFDLSLLQVPEDLEEAPLEGLLYTAFDLETTGLDPEKDAIIALGAVHLLGRRVLRQEV
FEALLDPGRPIAPAATEVHGLTWEMLQGKPRLEEVLPAFRAFVEDTVLLAHNGAFDMAFL
RRAGLDQPPLVDTLLLSHLLFPDLKDHRLEHLAERFGVPVLGRHTALGDALMTAEVFARM
VPLLKERGYATLGAVLRACARLPLARLRY
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggcctggcgctttttgggggccctgctcctcggcctcctcctggtggggggc
accctaggggtgggcttcttcctcctcctccagggggaggaagccctggggcgggagctt
ctgcgggtggcccgggaaaagcttcccctcctcctcttcctggccttcctcttcgcctcc
gtcctggcggccctcctccaccccctcttcctgggctacctggccgccacccgggccctg
ggccaggaggccgaggtcctcctggccaaccccggccaccgcctgcgcctccgggggccc
tttgagctccaggccctggcggggctcatcaaccgcctggccgcggaaaaggaggccctg
gaaaaggaggtggccgcccgggtggccgaggccaaggcccttctggagggggaacgccaa
cggctttccgccctcatcggccacctgccccaaggggtggtcctggccaaccccaagggg
caggtcctgctctacaacgcccaggcccgccgcctcctgggggaggggttgggggcgggc
aaaagcctcttcgccctcctggaccgggggcttctggtccacgccctggccctccccgag
gagcgcttcctggcccaggggcccaaggggcccttgcgcctgcaggcggtgcccctcgag
ggcgaaggggggtttttggtcctcctggaggaggccaaggaagccgagggggcggaggag
gcctccctccaccgcctgaaggacaagctctcggggctcaaggccctggtggaggccttg
gaaggggaggtcccgcctggccttgcccccctcgtggccacggccaaggctgcggcccag
gaactggccgggctggtgcagggcctggaagcccagccccaggtggccgaggttctggcc
caagaccttctccccctcctggccgaggccctggaacgggaggccggcctctcccccggc
tggtccctgggggaaaacgcccacggctgggccgtgcgggccgacacctacgccctggcc
cggggcctggccgccaccttggccgcggaggaggaggtcttcctccaaggggaacgggaa
ggaaacctcttccgccttaccctggtccttccccaccccgcccccgaaccccaccccctg
ctccaacaggccgtggccagggccgggggtaacctctggcgggaaggggcgcgcctttac
ctcctccttcccgccctcaaggcccccaggctccccgccccggagggccctcccccccgg
gccgaggtctttgacctctcccttctccaggttcccgaggacctggaggaagcccccttg
gaaggcctcctctacacggcctttgatctggagaccaccggcttagacccggaaaaggac
gccatcatcgccctgggggcagtccacctcctggggcggcgggtgctgaggcaggaggtg
tttgaggccctactggacccggggcggcccatcgcccccgccgccaccgaggtgcacggc
ctcacctgggagatgctccagggcaagccaaggctggaggaggtgctgcccgccttccgc
gccttcgtggaggacaccgtgctcctggcccacaacggggcctttgacatggccttcctg
cgccgggccggcctggaccagccccccttggtggacaccctgctcctttcccacctcctc
ttccccgacctgaaggaccaccggctggaacacctggcggaacgcttcggggtcccggtc
ctggggcggcacaccgccctgggggacgccctcatgaccgccgaggtcttcgcccgcatg
gtccccctcctcaaggaacgggggtacgccaccctgggggcggtgctccgggcctgcgcc
cggcttcccctggcccggctcaggtactga
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