Thermus sp. CCB_US3_UF1: TCCBUS3UF1_9780
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Entry
TCCBUS3UF1_9780 CDS
T01866
Name
(GenBank) Single-stranded DNA specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
thc
Thermus sp. CCB_US3_UF1
Pathway
thc03410
Base excision repair
thc03430
Mismatch repair
thc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TCCBUS3UF1_9780
03430 Mismatch repair
TCCBUS3UF1_9780
03440 Homologous recombination
TCCBUS3UF1_9780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thc03400
]
TCCBUS3UF1_9780
DNA repair and recombination proteins [BR:
thc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TCCBUS3UF1_9780
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TCCBUS3UF1_9780
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TCCBUS3UF1_9780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_C
DHH
RecJ_OB
DHHA1
E2_bind
Motif
Other DBs
NCBI-ProteinID:
AEV16023
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All DBs
Position
961549..963537
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AA seq
662 aa
AA seq
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MRWRVLPLPPLSEWRGLMEAFGIGPEAALAYWHRGVRRREELEPVLKPLPLQGLEGAVDL
LLRAIREGKRIRIHGDYDADGLTGTALLLRGLRALGAEVHPFIPHRLEEGYGILMERVPE
HLEAAEVFLTVDCGIANHAELKELVENGVEVLVTDHHTPKDTPPPGLVLHPAYTPGLGEH
PTGAGVAFTLLWALHERLGLPPPLEYADLAAVGTIADVAPLWGWNRALVREGLARIPTSP
WVGLRLLAQAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLLLTDSEAEAQALVEELS
RLNARRQAIEEAMLKRLLPQADPEAKAIVLLDEEGHPGVMGIVASRILEATLRPVFLVAQ
GKGTVRSLSPVSAVEALRNAEDLLLRYGGHREAAGFALDEALFPAFRRRIEAFAARFPDP
VLEVPLLGLFPPPSQLPEVYGALQALEPFGAGNPEPLFLLAGPPEEVRTLGEGKHLAFRL
EGVRVVAWRMGERPLPQEVEAAVLLTENRWNGTVSYEAQAQDFREPGELLGGVEPFAFPL
PLGEALARARLGEGVYVPEDNPEGLAYAQRAGFRLLPPEEASLWLGLPPSPVRVARVGVA
LGPAARERLRALPPLYTPEERLKALLRRRLLFAYERGHAGIFSEALWAYWEVSRVQAAAG
SP
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
gtgcgctggcgggtcctgcccctgccgcccctctccgagtggcgggggctcatggaggcc
ttcgggatcggccccgaggccgctttggcctactggcaccggggggtgcggcggcgggag
gagctggagcccgtcttgaagcccctacccctgcagggcctggaaggggcggtggacctc
ctccttagggccatccgggaggggaagcgcatccgcatccacggggactacgacgccgac
ggcctgaccggcacggccctgctcctaaggggcctgagggccttgggggccgaggtccac
cccttcatcccccaccgcctggaagaggggtacgggatcctcatggagcgcgtccccgag
cacctcgaggccgccgaggtcttcctcaccgtggactgcggcatcgccaaccacgcggag
ctcaaggagctggtggaaaacggggtggaggtgctggtcaccgaccaccacacccccaag
gataccccgcccccgggcctggtcctccaccccgcctacaccccaggcctaggggagcac
cccacgggggccggggtggcctttaccctcctttgggccctccacgagcgcctggggctt
cccccgcccctggagtacgcggatctggcggcggtgggcaccatcgccgacgtggccccc
ctttggggctggaaccgggccctggtgcgggagggcctggcccgcatccccacctccccc
tgggtggggctcaggctcctggcccaggcggtggggtacacgggcaaggccgtggaggtg
gccttccgcattgccccccggatcaacgccgcaagccgcctgggggaggcggaaaaagcc
ctaaggctcctccttacggatagcgaggccgaggcccaggccctggtggaggagctttcc
cgcctgaacgcccgccgccaggccatagaggaggccatgctgaagcgcctcctgccccag
gctgaccccgaggccaaggccatcgttctcctggacgaggagggccaccccggggtgatg
ggcatcgtggccagccgcatcctggaggccaccttgcgtccggtcttcctggtggcccag
ggcaaggggacggtgcggagcctgtccccggtgagcgcggtggaggccttgaggaacgca
gaagacctccttctgcgctatgggggccaccgcgaggcggcgggctttgccttggatgag
gcccttttcccggccttccggcggcgcatagaggcctttgccgcccgtttccccgacccg
gtgctggaggttccccttttggggcttttcccccctccttcccagctccccgaggtctat
ggggccctccaggccctggagcccttcggcgcggggaaccccgagccccttttcctcctg
gcggggcctcccgaggaggtgcgcaccctgggggagggcaagcacctggccttccgcctg
gaaggggtgcgggtggtggcctggcgcatgggggagaggcctctcccccaggaggtggag
gcggcggtcctcctcacggagaaccgctggaacggcaccgtgagctacgaggcccaggcc
caggacttccgcgagcccggggagctccttgggggggtggagccctttgccttccccctg
cccctgggggaggccctggcccgggcccgcctgggggagggggtgtacgtgccggaggac
aaccctgaagggctggcctacgcccagagggcagggttccgcctcctgcccccggaggag
gcctccttgtggcttggcctgccgccctcccccgtgcgggtggcgcgggtgggggtggcc
ctgggcccggctgcccgggaaaggcttagggctcttcctcccctgtacacccccgaggag
cggctcaaggccctcctccggcgccgccttctcttcgcctacgagcgggggcatgcgggt
attttcagcgaggccctttgggcctactgggaggtaagccgtgtacaagcagccgcggga
agcccatga
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