Candidatus Tokpelaia hoelldoblerii: BHV28_06800
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Entry
BHV28_06800 CDS
T04701
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thd
Candidatus Tokpelaia hoelldoblerii
Pathway
thd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHV28_06800 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thd03019
]
BHV28_06800 (rnr)
03016 Transfer RNA biogenesis [BR:
thd03016
]
BHV28_06800 (rnr)
Enzymes [BR:
thd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BHV28_06800 (rnr)
Messenger RNA biogenesis [BR:
thd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BHV28_06800 (rnr)
Transfer RNA biogenesis [BR:
thd03016
]
Prokaryotic type
tRNA degradation factors
BHV28_06800 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AQS41383
UniProt:
A0A1U9JU57
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All DBs
Position
complement(702603..704870)
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AA seq
755 aa
AA seq
DB search
MKKRSGNTPATGKKSSQRRLPQREEIIRFITENPDHCGKREIAKAFGLKGDDRIWLKHLL
RELVDDGVITKRKKRLATQGALPPIALLDIFGRDGDGGLLARPANWERGDPPVVHIRPSR
NPSAVVAGVGNRVLAKVFAAKEDDSHTYSGRIIRKIEKETQSVLGILRQRASGEWRLEPV
DRKQPELVIDPQSTEQAQHGSLVEVEIGKDPRYGLKRGFVRDVLGFQEGEKALSTIAILA
HGIPHIFPQAVRDAAEQAQPATMSGREDWRETAFVTIDPQDAKDHDDAVFAKADDDPQNP
DGHIVMVAIADVAAYVRPNEPMDEEALQRGNSVYFPDRVVPMLPERISNNLCSLREGEDR
PALAARMVFNAQGRKLRHSFHRVMIRSSARLSYEQAQKAVEGINDEKTAALVEPVLNPLW
AAYHALKQARDAREPLDLDLPEKKIILDEDGRVKDIYVPERLDAHRLIEEFMIAANVSAA
ETLQDKKQPFLYRIHDRPSLAKQESLREFLHTINMPLARGVDLTPAKFNTLLAQVADSES
QELVNQVVLRSQSQAEYSPVNIGHFGLNLHNYAHFTSPIRRYADLIVHRALIKALHFGND
GLTSAEEENLEDIAVQISAAERRAMAAERDTVDRLIAHYLADRVGVTFEGRITGVTRAGL
FISLATYGADGFVPISTLGSEYFHFDEARHALTGERSRKGYQLGDVVTIRLVEAMPIAGA
LRFEMISPARALPFSTQSHHKTGRYKRRSGRNRRH
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagcgctccggaaatacccctgcgactggcaaaaaatcctcacagcgccgtttg
ccgcagcgtgaggagattatccgttttattacggaaaatcccgatcattgcggcaagcgc
gaaatcgccaaggcatttggcctcaaaggggacgaccgcatctggctcaaacacctgttg
cgcgagctggtggatgacggtgtcataaccaaacgcaaaaagcggcttgccacacaaggg
gcgctgccccccattgcgcttcttgacattttcggccgtgatggcgatggcggactgctg
gcccgtcctgccaattgggaacgcggcgacccgcctgtcgtgcatatccgcccttcccgc
aacccgtctgcggtggttgcgggtgtgggcaatcgggtgctggcaaaagtgtttgccgcc
aaagaggatgactcccacacctatagcggcagaattatccgcaaaattgaaaaagaaaca
caatccgtgctggggatattacgccagcgggcaagcggcgaatggcggcttgaaccagta
gaccgcaagcagcctgaactggtcatcgacccgcaatccaccgaacaggcgcaacacggc
agccttgtcgaggtggaaatcggcaaagacccgcgctatggcctcaaacgcggctttgtg
cgtgatgtgctcggctttcaggagggggaaaaagccctttcaactattgccattcttgcc
catggcattccgcatatcttcccgcaggctgtgcgcgatgcggcggaacaggcacagccc
gccacgatgtccggacgtgaagactggcgcgagacagcttttgtcaccattgacccgcaa
gacgccaaagaccatgatgacgcggtttttgccaaggccgatgacgacccgcaaaacccg
gacggccatatcgtcatggtggcaatcgccgatgttgccgcttacgtgcgcccgaatgag
ccgatggacgaggaagcgttacaacgcggcaattcggtttactttcccgaccgtgtcgtg
ccgatgttgccagagcgcatttccaataatctgtgttccctgcgtgagggcgaagaccgc
cccgctctcgcagcgcgcatggtgttcaatgcgcaagggcgtaaactgcgccacagtttc
caccgtgtcatgatacgctcaagcgccagactgagttatgaacaggcgcaaaaggcggtt
gaaggcataaatgacgagaaaaccgccgcactggttgaaccggttctcaacccgctctgg
gcggcctatcatgcgttgaaacaggcgcgtgatgcgcgcgagccgctggatcttgattta
ccggaaaagaaaatcattctggatgaagacgggcgtgtcaaagatatttacgtgccggaa
cggcttgacgcgcaccggctgattgaagaattcatgattgccgccaatgtgtctgcggca
gaaaccttgcaggacaaaaaacagccgtttctctatcgtattcacgaccggccttcgttg
gccaagcaggaatccctgcgtgaatttctgcacaccatcaatatgccgcttgcccgcggg
gtggatttgacacctgccaaattcaacacactgctggcgcaggtggcggacagcgaaagc
caggaactggttaatcaggtggtattgcgctcgcaaagccaggcggaatacagccctgtc
aatatcggccatttcggtttgaacctgcacaattatgcgcatttcacttcccccatccgc
cgctacgctgatttgattgtgcatcgcgcgctgatcaaggcgctgcattttggcaatgac
ggactgacaagtgcggaagaagaaaatcttgaagatattgctgttcagatttccgccgcc
gaacggcgcgccatggcggcagaacgggatacagttgaccggctgattgcccattatctt
gccgaccgcgtcggcgtgacatttgaagggcgcataaccggtgttacccgggcggggctg
tttatcagccttgccacctatggcgccgacggttttgtgccgatttcaacccttggcagc
gaatattttcactttgatgaagcccgccatgccctgaccggtgaacgcagccgcaagggt
tatcagctgggcgacgtcgtcaccatccggctggtggaagccatgccgattgccggcgcg
cttcgttttgagatgatctcaccggcacgcgccctgcctttttccacccagtcacaccac
aaaaccggcagatacaagcgccgctccggccgcaaccgccggcattaa
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