Thermococcus sp. 4557: GQS_01315
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Entry
GQS_01315 CDS
T01588
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
the
Thermococcus sp. 4557
Brite
KEGG Orthology (KO) [BR:
the00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
the03016
]
GQS_01315
Enzymes [BR:
the01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GQS_01315
Transfer RNA biogenesis [BR:
the03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GQS_01315
Prokaryotic type
tRNA splicing ligases
GQS_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
DUF3071
Motif
Other DBs
NCBI-ProteinID:
AEK72165
LinkDB
All DBs
Position
271467..274349
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AA seq
960 aa
AA seq
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MVPLKRIDKIRWEIPKFDKRMRVPGRVYADDQLIEKMRGDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCLAPGSKVLTEHGYWVKVEEMPGK
FKLQGLRVYDVDEGHNDFSEVAFVAERDVEENELAVRIVTESGKVIEGSEDHPVLTPQGY
VYLGNVREGDEVLVYPFEGVEFEERRGVLLSEEDFEDEDGQIVKFLREKNLLPLRWEDPR
IGTLARILGFAFGDGHLGEMDGRLYLSFYGKEGTLRELKKDLERLGVNANLYVRERDYRI
ETVSGEYEGRSVSAELRVTSRSFALLMEKLGMPRGKKADKAYSVPEWIKSAPLWVKRNFL
VGLFAADGSIVEFKGNTPLPINLTQSKAEKLEENLREFMNEVTELLAEFGVKTTVYMVKS
RKGVTYRLALVGEESIRNFLGRINYEYDLEKKAKGLVAYAYLKFKERVRAERKRAAEVAR
KVYAETGSVTKAHEAVKDVVNKRFVERAIYEGDKEPRVPKDFPTFEEFARERGYEGGFVA
EKVLKVESVRPGYEKFYDIGVYHRAHNFIANGVVVHNCGVRLIRTNLTEKEVRPRIKELV
DTLFKNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGADP
NAVSQKAKQRGAPQLGSLGSGNHFLEVQVVDKVFDEKIAEAYGLYEGQVVVMVHTGSRGL
GHQVASDYLRIMEKANRKYGVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMIT
HWVRESFEEVFKRKAEDMEMSIVYDVAHNIAKVEEHEVDGKKVKVVVHRKGATRAFPAGH
PDVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMKETFGSSCHGAGRLMSRHAATRQYRG
DRLRNELLQRGIYVRAASLRVVAEEAPGAYKSVDNVVNVVHQAGIANLVARMRPMGVAKG
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggttccgctgaagaggattgacaaaatccggtgggagattcccaagttcgacaagcgc
atgagagttccgggcagggtttacgctgacgaccagctcatcgagaagatgcgcggggac
aggacgctggagcaggccgcgaacgtcgcaatgctccccggcatctacaagtactccatc
gtcatgcccgacggccatcagggctatggcttcccgattggaggagtagcggccttcgac
gtgaaggagggtgtgataagccccggaggggtcggatacgacattaactgccttgctcct
ggctcaaaagtcctcacggagcatggatactgggttaaagtcgaggagatgcccgggaag
ttcaagctccaggggctgagggtctacgacgttgatgagggacacaacgatttctcagag
gtcgccttcgttgccgagagggacgttgaagagaacgagctcgcggtgagaatcgtcacc
gagtcagggaaggtcatcgagggcagcgaggaccacccggttttaactccacagggatac
gtctatctcggcaacgtcagggagggcgacgaagttctcgtttacccgttcgaaggtgtt
gagttcgaggagagaagaggtgttctcctgagcgaggaggattttgaggacgaggacggg
caaatagtgaagttcctgcgcgagaaaaatctactaccgctccgctgggaggacccgagg
ataggaaccctcgcgagaatcctcggcttcgctttcggcgacggccacctcggcgagatg
gacggcaggctctacctgagcttctacgggaaggaaggaacgctgagggagctgaagaag
gaccttgagaggctcggcgtaaacgccaacctctacgtgcgcgagagggactaccgcatc
gagacggtgagcggtgagtatgagggcaggagcgtctcggccgagctgagggtcacctca
aggagctttgccctgctcatggagaagctcggaatgccgaggggtaagaaggcggataag
gcttacagcgtccccgagtggattaagagcgctccgctctgggtgaaaaggaacttcctt
gtcggactcttcgcggctgatggaagcatcgtcgagttcaagggcaacacccctctaccg
ataaacctcacccagtcgaaagcagaaaagcttgaggaaaacctcagggagttcatgaat
gaggtaaccgaactcctcgcagagttcggtgtcaagacgacggtttacatggtcaagtcg
aggaagggcgtaacctacagactagccctcgttggcgaggagagcatcaggaacttcctc
gggaggataaactacgagtacgacctcgagaagaaggccaaaggcttagttgcatacgcc
tacctgaagtttaaggagcgcgttagggccgagaggaagagagcggccgaggtagcaagg
aaagtttacgcggaaactggaagcgtgacgaaggcccacgaggctgtcaaggacgttgtc
aacaaacgcttcgtcgagagggcaatttacgagggcgataaagaaccgcgcgttcccaag
gatttcccgaccttcgaggagttcgcgcgcgagaggggctacgagggaggcttcgtcgct
gagaaggtcctcaaggtcgagagtgtcaggccgggttatgagaagttctacgacatcggt
gtctaccacagagctcataacttcatagccaacggcgtcgtagttcacaactgcggcgtt
cgccttatccgcacgaacctcaccgagaaggaagtgaggccgaggataaaggagctcgtt
gacacgctcttcaagaacgtgccgagcgggctgggaagcaagggccgtgtgagactccac
tggactcagcttgacgatgttctcgccgacggtgccaagtgggccgtcgataacggctac
ggctggaaggaggatttagaacacctcgaagaaggcgggagaatggagggcgccgaccca
aacgcggtcagccagaaggcgaagcagaggggtgccccgcagctcggctccctcggctcc
ggaaaccacttccttgaggtccaggtcgtcgataaggtctttgatgagaagatagcggaa
gcgtatggcctctacgaagggcaggtcgtcgtcatggttcacaccggaagcaggggactc
ggccaccaggtggcgagcgactacctcaggataatggagaaggccaacaggaagtacggg
gtgccgtggcccgaccgtgagctcgtgagtgttcccttccagacagaggagggacagagg
tacttcagcgcgatgaaagcggccgccaactttgcctgggctaacaggcagatgataacc
cactgggtcagggagtcctttgaagaggtcttcaagaggaaggccgaagacatggagatg
agcatcgtctacgacgtcgcccacaacatagccaaggtcgaggagcacgaggttgatggg
aagaaggtcaaggtggtcgtccacaggaagggagcgacgagggcgttcccagcaggccat
ccggacgtgccgagggcctaccgtgacgtcggccagccggttctgattccgggctcgatg
ggaacggcgagctacgtcctggccggtgcggagggttcaatgaaggagaccttcggcagc
tcctgccacggtgcggggaggctgatgagcaggcacgccgcaaccaggcagtaccgcggc
gataggcttagaaatgagctcctccagaggggaatctacgtccgtgcggcctcgctccgt
gtcgttgccgaggaggctccgggagcctacaagagcgttgacaacgtcgtcaacgtcgtc
caccaggctggcatagcgaacctcgtggcgagaatgcgcccgatgggcgtcgccaagggc
tga
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