Thermococcus sp. 4557: GQS_05115
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Entry
GQS_05115 CDS
T01588
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
the
Thermococcus sp. 4557
Pathway
the03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
the00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQS_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
the03019
]
GQS_05115
Messenger RNA biogenesis [BR:
the03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GQS_05115
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
GQS_05115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
RRP40_S1
KH_2
KH_KhpA-B
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AEK72924
UniProt:
G0HIZ5
LinkDB
All DBs
Position
complement(967362..968132)
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AA seq
256 aa
AA seq
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MRRIFVKSRELVVPGTLLAQGPFKNGRGTFREGNRIYSTVVGLVEIRGDTIRVIPLEGPY
IPEVGDNVIGKIVDVRFSNWTVDIGAPYQAGLRVQDATEERIDLAKTDLRRIFDIGDIIY
ARIKAYNEINQIDLTTKGMPFRGGPLRGGQIVEITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGKNEELEKLAIDAILKVNRESHTQGLTDRVKELLMTRLRELKERGIIE
EIPQIEEPTAGKGEGE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggatttttgtaaagagtagggaacttgtggtcccgggcactttactcgcccag
gggccgtttaagaacggaagagggaccttcagggaaggcaacaggatatactccaccgtc
gtggggctcgttgagataaggggcgacaccatacgtgttattccgctcgaggggccgtac
atacccgaggttggcgacaacgtcataggtaagatagtggacgtcaggttctccaactgg
acggttgacataggcgccccgtatcaggcgggcctccgcgttcaggatgccacggaggag
cgcatcgacctcgcaaagacagacctgcgcaggatattcgacataggggacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctcaccacaaagggcatgccc
ttcaggggcggtcccctgcgcggggggcagatagtggagataaccccctccaaggtgccc
aggctcataggtaagggcggttcgatgataaacctcatcaagaagctgaccggcacgagg
ataatcgtcggccagaacggctgggtgtgggtcagcggaaagaacgaggagctcgaaaag
ctggccatcgatgccatcctcaaggtgaacagggagagccacactcaggggctgaccgac
agggtcaaggagcttctcatgaccaggctccgggagctcaaggagcggggaattattgag
gagataccgcagattgaggaaccaaccgctggaaagggtgagggagaatga
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