Thermococcus sp. 4557: GQS_09040
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Entry
GQS_09040 CDS
T01588
Name
(GenBank) transcription factor
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
the
Thermococcus sp. 4557
Pathway
the03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
the00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GQS_09040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
the03000
]
GQS_09040
03021 Transcription machinery [BR:
the03021
]
GQS_09040
Transcription factors [BR:
the03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
GQS_09040
Transcription machinery [BR:
the03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
GQS_09040
RNA polymerase III system
TFIIIB
GQS_09040
RNA polymerase I system
SL1/TIF-1B
GQS_09040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TBP
DUF3378
Csa3_N
DUF2250
Motif
Other DBs
NCBI-ProteinID:
AEK73702
LinkDB
All DBs
Position
1714762..1715334
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AA seq
190 aa
AA seq
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MVDMSNVKLRIENIVASVDLFTQLNLEKVIEICPNSKYNPEEFPGIICRFEEPKVALLIF
SSGKLVVTGAKSVEDIERAVNKLIQMLKKIGAKFARAPQIDIQNMVFSGDIGMEFNLDAV
ALSLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEK
YGLIEEEEEW
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
ttggtcgacatgagcaatgtaaagctcaggattgaaaacatcgtcgcttctgtggactta
ttcacccagctcaaccttgagaaggttattgaaatctgccccaactccaagtacaacccc
gaggagttccccggcataatctgccgcttcgaggagcccaaggttgctcttctgatattc
agctcaggtaagctcgtcgtcaccggcgcaaagagcgtcgaggacatagagcgcgccgtc
aacaagctcatccagatgctcaagaagataggcgccaagttcgcccgcgccccgcagata
gatatccagaacatggtcttcagcggcgacataggcatggagttcaacctcgatgccgtc
gctctgagcctgccgaactgtgagtacgaacccgagcagttccccggcgttatctaccgc
gttaaggagccgagggctgtgatactgctcttctcttcgggcaaaatcgtctgctccgga
gcgaagagtgagcacgacgcctgggaagccgttagaaagctcctccgcgagctggagaag
tacggtctcatcgaggaagaggaggagtggtga
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