Thermococcus sp. 4557: GQS_10230
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Entry
GQS_10230 CDS
T01588
Name
(GenBank) DEAD/DEAH box RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
the
Thermococcus sp. 4557
Pathway
the03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
the00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GQS_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
the03019
]
GQS_10230
03009 Ribosome biogenesis [BR:
the03009
]
GQS_10230
Enzymes [BR:
the01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GQS_10230
Messenger RNA biogenesis [BR:
the03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GQS_10230
Ribosome biogenesis [BR:
the03009
]
Prokaryotic type
rRNA helicases
GQS_10230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DUF2278
Motif
Other DBs
NCBI-ProteinID:
AEK73939
UniProt:
G0HP89
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All DBs
Position
1920517..1921737
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AA seq
406 aa
AA seq
DB search
MAVRQKGFSSPTDIQREVIPRLLSGDVDIIGQSQTGTGKTAAFALPIIEAIDPKIKAVQA
IILTPTRELALQVSDEIKSLRGRKRVYVYAVYGGQPIGPQIRALERGTHVVVGTPGRVLD
HIRRGTLDLSSVKFFILDEADRMLDMGFIDDIEAIFRETPRKKRVLMFSATMPPEIKRLA
RRYMGDYEVVSVSSDELVPEMVDQEYVEVVPARKLTMLRKILDGTGDFYGIVFCATKRET
RELSEKLRRAGYSAEALNGDMSQAARERTFWRFKTKRTRILVATDVAARGLDVQDINYVV
NYSLPMTAEDYVHRIGRTGRMGKKGRAVTFIMPGEFRRLRYIAQTAGVEIRKSELSEEIP
REYRERYERENRRSYSRNSRRSNGGKRGRRDYSGGYSRTSGSRGKW
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtcaggcagaagggcttctcaagtccgacggatattcagagggaggtaatcccg
cgccttctatcgggcgacgtcgatataatcggccagtcccagacggggacgggaaaaaca
gcggcatttgcgctcccgataatcgaggctatcgatccgaagataaaagccgttcaggcg
ataatactcacgcccacgagggagcttgccctccaggtgtcggatgaaatcaagagcctc
cgcgggaggaagagggtttacgtctacgcggtctacggcggccagccgatagggccgcag
ataagggcccttgagaggggaacccacgttgtagtcggaacccccggcagggttctcgac
cacataaggcgcgggaccctcgacctgagctccgtgaagttcttcatcctcgatgaggcc
gacaggatgctcgacatgggattcatagacgacatagaggcgattttcagggagacgccg
agaaagaagcgtgtgctgatgttctccgccacgatgccgccggagataaagaggctcgcg
aggcgctacatgggtgactacgaggtggtaagcgtcagcagcgacgagctcgtccccgag
atggtggatcaggagtacgtggaagtcgttccggcgaggaagctcacgatgctcaggaaa
atactcgacggcaccggggacttctacggcatagtcttctgcgccaccaagagggaaaca
agggagctgagcgagaagctcaggagggccggttacagcgccgaggcactcaacggcgac
atgagccaggccgcgcgcgagagaaccttctggcgcttcaagaccaagagaacgaggatt
ctagtggcaaccgatgtcgccgccaggggcctcgacgtgcaggacataaactacgtcgtg
aactactccctgcccatgacggccgaggactacgtccacaggataggcagaaccggcagg
atgggcaagaaaggaagggcggtgaccttcataatgcccggcgagttcaggaggctccgc
tacatcgcccagaccgcgggcgttgagatacgcaagtccgagctgagcgaggagattccg
cgcgagtaccgcgagaggtatgagagggagaaccggaggagctactcccggaactcaaga
cgcagtaacggcggaaaacggggaaggagagactactcgggaggttattcaagaaccagc
ggctcccgagggaagtggtga
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