Thermomonas sp. HDW16: G7079_05460
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Entry
G7079_05460 CDS
T06498
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
theh
Thermomonas sp. HDW16
Pathway
theh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7079_05460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theh03019
]
G7079_05460
Enzymes [BR:
theh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G7079_05460
Messenger RNA biogenesis [BR:
theh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G7079_05460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
CMS1
ACPS
Motif
Other DBs
NCBI-ProteinID:
QIL20227
LinkDB
All DBs
Position
1188129..1189460
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AA seq
443 aa
AA seq
DB search
MTFETLGLAPALLRALADNNYTTPTPIQEQAIPLILAGHDVLGGAQTGTGKTAAFALPVL
NHLSKLTPPAGPRKPRALVLVPTRELAVQVADSFKTYGRHLKLNVTTLFGGVGMQPQIDQ
LRRGVDVLVACPGRLIDHLDRGSVKLDAVEVLILDEADRMLDMGFLPAIKRILNRLPKQR
QTLLFSATFEAQIKALALEFMNNPQQVQVAAQNTIAQTITHRAHPVDGSRKRDLLIQILS
QRHTDQVLVFGKTKHGCNRLAEQLEEAGLPSVAIHGNKSQAARQKALKDFKSGKARILVA
TDVAARGLDIPDLPLVINHDLPMVAEDYVHRIGRTGRNGAQGEALSLVSPEEGGLLRQIQ
RLLKVDLTMDVVPGFAPSKPIRLDTPIPKNGGGGGQRPPGRPAARPHARPAARPTTHAGP
KQHRAGGQAAYAGKRNAPRGTRA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgaaacccttggccttgcgcctgctttgctgcgcgcgcttgccgacaacaac
tacaccaccccgaccccgatccaggaacaggcgatcccgctgatcctggccggccacgac
gtgctgggcggcgcccagaccggtaccggcaagaccgccgcgttcgcgctgccggtgctc
aaccacctgtccaagctgaccccgccggccggcccgcgcaagccgcgcgcgctggtgctg
gtgcccacccgcgaactggcagtgcaggtggccgacagcttcaagacctacggccgccac
ctcaagctcaatgtcaccaccttgttcggtggcgtgggcatgcagccgcagatcgaccag
ctgcgtcgcggcgtggacgtgctggtggcctgcccgggtcgcctgatcgaccacctggat
cgcggcagcgtgaagctggacgctgtcgaagtgctgatcctggacgaagccgaccgcatg
ctggacatgggcttcctgccggcgatcaagcgaatcctcaatcgcctgccgaagcagcgc
cagaccctgctgttctcggccacgttcgaggcgcagatcaaggcactcgcgctcgagttc
atgaacaacccgcagcaggtgcaggtggcggcgcagaacacgattgcgcaaaccatcacc
caccgtgcgcatccggtcgacggctcgcgcaagcgcgacctgctgatccagatcctgtcg
cagcgccacaccgaccaagtgctggtgttcggcaagaccaagcacggttgcaaccgcctg
gccgagcagctggaagaagcgggcctgccgtcggtcgcgatccacggcaacaagagccag
gccgcacgccagaaagcgctgaaggacttcaagtccggcaaggcgcggatcctggtggcg
accgatgtggccgcgcgtggcttggatatccccgacctgccgctggtgatcaaccacgac
ctgccgatggtcgccgaagactatgtgcaccgcatcggccgcaccggtcgcaacggcgcg
cagggcgaagcgctgtcgctggtgtcgccggaagagggcggcctgctgcggcagatccag
cgcctgctgaaggtcgatttgacgatggacgtggtgcccggtttcgcgccgagcaagccg
atccgcctggatacgccgatcccgaagaacggcggtggcggtggccagcgcccgccgggt
cgcccggccgcgcgtccgcacgcgcgtcccgcagcgcgtccgaccacccacgccggtccg
aagcagcaccgtgcgggcgggcaggccgcgtatgccggcaagcgcaacgcgccgcgtggc
acgcgcgcctga
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