Thermomonas sp. HDW16: G7079_05995
Help
Entry
G7079_05995 CDS
T06498
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
theh
Thermomonas sp. HDW16
Pathway
theh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7079_05995 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theh03019
]
G7079_05995 (rnr)
03016 Transfer RNA biogenesis [BR:
theh03016
]
G7079_05995 (rnr)
Enzymes [BR:
theh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G7079_05995 (rnr)
Messenger RNA biogenesis [BR:
theh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G7079_05995 (rnr)
Transfer RNA biogenesis [BR:
theh03016
]
Prokaryotic type
tRNA degradation factors
G7079_05995 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QIL20329
UniProt:
A0A6G7ZU94
LinkDB
All DBs
Position
1301036..1303567
Genome browser
AA seq
843 aa
AA seq
DB search
MMSTDLCDANEACTDAMYHRCMTKPPSKRGTGRGKAPTGKSGKPSSKQAKPGGTHGGKPA
AGKRPPWMPELPASPPSRASGLQQSPPRREAPPPRAPSFDPHAEREAQRYAQPIASREMI
LQVLAASDGPLDADALAQKLALTAPDRFEALEKRLQAMLRDGQLLQNRRGGYAPAAQMDL
VPGVVIANENGFGFLRPDAGGGDDLFLPPFEMRKVMHGDRVLASVTGMDRRGRREGTIVE
VLERRLTRLIGRYTEEAGIGYVVPDDKRVQRNVMIPADGRNEARNGQLVVAEITTPANSH
RPPIGKVLAVLGDKLTASQAVEAAIHGHDIPHEFPPEVLAQATAVPLEVQAGEIPKRVDL
RGVPLVTIDGEDAKDFDDAVWCEPTRDGFRLIVAIADVSHYVRPGTPLDDEAQLRATSVY
FPGFVVPMLPETLSNGICSLMPKVDRLCFVCDMQVGRDGIVTESSFYEAVMHSHARLTYT
DVWNAVGEGIPEDDHAAALAKIGPLLPQIQRLHQLYKVLDKARSKRGAIEFESSEVRFVL
DAKGAVTQAGMLQRNDAHKLIEECMIAANVQAALFLLESRVPAPYRDHDRPPESKYADLE
EFLKEFQLRMPPWAKVKPKDFRNLLEKIRERPDAALLESVILRSQSLAVYAPENIGHFGL
ALEAYAHFTSPIRRYPDLLVHRGIKHALAGGRPDTYTYSPHEMAALSLQCSERSRRADEA
QREVDERYRAAWMEGHVGKEFDGTISGVTSFGLFIELDESKVNGLVHVTQLPRDFYHFDA
VRKTLTGERRGHEYRLGDRVRIVVLKASVEDRKIDFRLVDEEGGGVKPLPERGKPAKRQK
QKY
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaacggatctttgcgatgcgaacgaagcatgcacggacgcgatgtaccatcgc
tgcatgaccaagcctcccagcaagcgcggcaccggccgcggcaaggcgcccacgggcaaa
tccggaaagccgtcgagcaagcaagccaagccggggggcacgcacggcggcaagcctgca
gccggcaagcgtccaccatggatgccggagctaccggcatcgcccccttccagggcatcc
gggttgcaacagtccccgccccgtcgcgaagcacctccgccgcgtgcgccgagcttcgat
ccgcatgccgaacgcgaagcccagcgctacgcgcaacccatcgccagccgcgagatgatc
ctgcaggtgctggccgccagcgacgggccgctggatgccgatgcactggcgcagaaactc
gcgctgaccgcgccggatcgctttgaggcgctggaaaagcgcctgcaggcgatgttgcgc
gatggccagttgctgcagaaccggcgcggtggttatgcgccggccgcgcagatggacctg
gtgccgggcgtggtgatcgccaacgaaaacggcttcggcttcctgcgtcccgatgccggc
ggtggcgatgacctgttcctgccgccattcgagatgcgcaaggtcatgcatggcgaccgc
gtgctggccagtgtgaccggcatggatcggcgcgggcgccgcgaaggcacgatcgtcgag
gtattggaacgccgcctcacgcgcttgattggccgctacacggaagaggcgggtatcggc
tacgtggtgccggacgacaagcgcgtacagcgcaacgtgatgattcctgccgacggccgc
aatgaagcgcgcaacggtcagttggtcgttgcggaaatcaccacgccggccaattcgcac
cgcccgccgatcggcaaggtgctggcggtgctgggcgacaagctcaccgcatcgcaagcg
gtcgaagcggcgatccacggccacgacatcccgcacgaatttccgcccgaagtgttggcg
caggccaccgccgtgccgctggaggtgcaggccggcgagatccccaagcgcgtggatctg
cgcggcgtgccgctggtcaccatcgatggcgaggacgccaaggatttcgatgatgcggtg
tggtgcgaacccacccgcgacggtttccgcctgatcgtcgcgattgccgatgtgtcgcat
tacgtgcgcccgggcacgccgctggacgacgaggcgcagctgcgcgcgacctcggtgtat
ttccccggcttcgtggtgccgatgctgccggagacgctgagcaacggtatctgctcgctg
atgccgaaggtggatcgcctgtgcttcgtctgcgacatgcaggtgggccgtgacggcatc
gtcaccgaatccagcttctacgaagcggtgatgcactcgcacgcgcgcctgacctatacc
gatgtgtggaacgcggtgggcgagggcattccggaagacgatcacgccgcggcattggcc
aagatcggcccgctgttgccgcagatccagcgcctgcaccagctgtacaaggtgctggac
aaggcgcggtccaagcgcggtgccatcgaattcgagagcagcgaagtgcgtttcgtgctg
gacgccaagggcgcagtgacccaggccggcatgctccagcgcaacgacgcgcacaagctg
atcgaggaatgcatgatcgcggccaatgtgcaggccgcgctgttcctgctggaaagtcgc
gtgcctgcgccgtatcgcgatcatgaccgcccgccggaatccaagtacgcggacctggag
gaattcctcaaagagttccagctgcgcatgccgccgtgggccaaggtcaagcccaaggat
ttccgcaacttgctggagaagatccgcgagcggcccgatgcggcgttgctagaatcggtg
atcctgcgtagccagtcgctggcggtgtacgcgccggagaacatcgggcattttggtttg
gcgctggaagcgtatgcgcacttcacctcgccgatccgtcgctatccggatttgctggtg
catcgcgggatcaagcatgcattggctggcggcaggccggatacctacacttattcacca
cacgaaatggcggcgctgtcgttgcaatgctccgagcgttcgcgtcgcgccgacgaggcc
cagcgcgaggtggacgagcgctatcgcgcggcgtggatggaaggccacgtcggcaaggaa
ttcgacggcaccatcagcggcgtgaccagcttcggcctgttcatcgagctggacgaatcc
aaggtcaatgggctggtccacgtcacccaattgccgcgcgatttctaccacttcgatgcg
gtgcgcaagacgctcaccggcgaacgtcgcggccacgaataccgcttgggcgatcgcgtg
cggatcgtggtgctgaaggccagcgtggaagaccgcaagatcgatttccggctggtcgat
gaggaaggcgggggcgtgaagccattgccggagcgtggcaaaccggcgaaaaggcagaag
cagaagtactga
DBGET
integrated database retrieval system
