Thermomonas sp. HDW16: G7079_07375
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Entry
G7079_07375 CDS
T06498
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
theh
Thermomonas sp. HDW16
Pathway
theh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G7079_07375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theh03019
]
G7079_07375
03009 Ribosome biogenesis [BR:
theh03009
]
G7079_07375
Enzymes [BR:
theh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G7079_07375
Messenger RNA biogenesis [BR:
theh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G7079_07375
Ribosome biogenesis [BR:
theh03009
]
Prokaryotic type
rRNA processing factors
G7079_07375
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Mdt30
Motif
Other DBs
NCBI-ProteinID:
QIL20570
LinkDB
All DBs
Position
complement(1578300..1581236)
Genome browser
AA seq
978 aa
AA seq
DB search
MKRMLINATQAEELRVAIVEGQTLYDVDIEQPSKDNKKSNIYKGRITRLEPSLEAAFVEY
GGDRHGFLPLKEISRDYFQAGVDPNKAGLKELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPTAGGVSRRIEGDDRAELKKAMDALNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLSIWKAIAEAALTKPAPFLIYQESRLIVRALRDYMRSDIGEILVDTPEMYAEAL
DFVEQVMPHNKRKLKHYTDDIPLFNRFQIESQIEGAYERTIRLPSGGALVIDQTEALTAV
DVNSARATKGGDIEETAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMNSNKHQRDVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGEASQIVCPTCEGHGRMRSVESLSLS
IIRVAEEHAMKDNTGQVLVQAPVEIANFLLNEKRNALREIEQRHDAPIVIVADEQLHTPH
YEVTRIRENELGEDTARPSYQRGTPRKLATIALTKAQLNIPPAPVVTNVKPAQPAPLREP
KPMPVEVEQRPTAAAAPVAVAATGGIMGWLKSVFAGAPAPASQPVKTEAQVSRREDRGNR
RDRNDRDGRGNRNDRSDRGNRGNAQNDNRGGNKQADAQKQQQPQKQQKQQQQPKQDKPQQ
QAQKQQQPQKQQQQQQQPKPKQDKPQQAAKPAPAEAAVAAAATTLAVVDDTVINTAIVAE
QAAATTTLPAQTTGSETANAATDDVNGEGGSKRRRGRRGGRRRRRGAGEAAGAADELLLD
QDGPLDETPAVDGSQPEFDFDDIEAPAPVAVVRETAQVVEAAPAVSAEPEPARMPSPAIA
AVAAIETAAITAEEVAPATAAIASGPAISEPVVETVAEAPPPITAEVVAGASQPTLTVEE
TVVEAVEIAKADAAEEVIVAAETVSASAAPENVVIAAEDAAPSRAEQLRGLFDTAREDAA
TSPLPSQGEASTEASRNA
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaacgccacgcaggcagaagaactgcgcgtggccatcgtcgaa
ggccagacgctgtacgacgttgacatcgaacaaccgtccaaggacaacaagaagtccaat
atctacaagggccgcatcacccggctcgagccgtcgctggaggccgccttcgtcgaatac
ggcggcgatcgccacggcttcctgccgctgaaggaaatctcccgcgactacttccaggct
ggcgtcgacccgaacaaggccggcctgaaggaactcctgcgcgaaggccaggaagtcgtg
gtgcaggtcgacaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatctcg
ttggccggccgctacatggtgctgatgccaaactcgcccaccgccggcggcgtctcgcgt
cggatcgagggcgacgaccgcgccgagctgaagaaggcgatggatgcgctcaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgttggccgcgatgccgaagaactgcag
tgggacctggattacctgctgtcgatctggaaggcgatcgccgaggccgcgctgaccaag
cccgcgccgttcctgatctaccaggagtcgcgcctgatcgtgcgcgccctgcgcgactac
atgcgctcggacatcggcgagatcctggtcgatacgccggagatgtacgccgaggcgctg
gacttcgtcgaacaggtgatgccgcacaacaagcgcaagctgaagcactacaccgacgac
atccccctgttcaaccggttccagatcgaatcgcagatcgaaggcgcctacgagcgcacc
atccgcctgccttccggcggcgcgctggtgatcgaccagaccgaggcgctgaccgcggtc
gacgtgaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgcgttcaacacc
aacctggaagcggcagaggaagtggcccgccaattgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgaactcgaacaagcaccagcgcgacgtcgagaacaag
ctgcagaacgcgctgaagtacgaccgcgcacgcgtgcagctgggccgcatcagccgcttc
ggcctgatggaaatgagccgccagcgcctgcgcccgagcctgggcgaagccagccagatc
gtctgccccacctgcgaaggccacggccgcatgcgcagcgtcgaatcgctgagcctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggacaacaccggccaggtgctggtgcag
gcgccagtggaaatcgccaatttcctgctcaacgagaagcgcaacgccctgcgcgaaatc
gaacagcgccacgatgcgccgatcgtgatcgtcgccgacgaacagctgcacaccccgcac
tacgaagtcacccgcatccgcgagaacgaactgggcgaggacaccgcgcgccccagctac
cagcgcggcaccccgcgcaagctggcgacgatcgcgctgaccaaggcccagctcaacatc
ccgccagcaccggtggtgaccaacgtcaagccggcgcagcctgcaccgctgcgcgagccc
aagccgatgccggtggaagtcgaacagcgtcctactgctgcggccgcaccggtcgcggtg
gccgcgacaggcggcatcatgggttggctgaagtcggtgttcgctggcgcgcctgcaccg
gcatcgcagccggtcaagaccgaagcacaagtcagccgtcgcgaggatcgcggtaatcgt
cgtgaccgcaatgatcgcgatggccgcggcaaccggaacgaccgcagtgatcgtggcaac
cgcggcaacgcgcagaacgacaaccgtggtggcaacaagcaggccgatgcgcaaaagcag
caacagccgcagaaacagcaaaagcaacaacaacagccgaagcaggacaaaccgcagcag
caggcgcagaagcagcaacaaccgcaaaagcaacagcaacagcagcagcagccgaagccg
aagcaggacaagccgcaacaggcggcgaagccggcaccagccgaggctgccgtcgccgca
gccgcaaccacgcttgccgttgtcgatgacaccgtgatcaacaccgccatcgtggccgaa
caggccgctgcaaccaccacactaccggcacaaaccacaggatccgagaccgcaaacgcg
gcaaccgatgacgtcaatggcgaaggcggttccaagcgtcgtcgtggccgccgcggtggc
cgtcgtcgtcgtcgcggcgccggtgaagccgcgggcgccgccgacgagctgttgctggat
caggacggtccgctggacgaaaccccagcggtagacggttcgcagccggaattcgatttc
gacgatatcgaggcgccggcgccggtcgccgtcgtgcgcgaaaccgcccaagtggtcgag
gccgcacctgccgtatctgccgaacccgaacccgcccgcatgccctcacccgccatcgcg
gcggtcgccgccatcgaaacggccgcgatcacggcagaagaagtcgcgccagccacggcc
gccattgcaagcggacctgcgatcagcgagccggttgtcgagactgtcgccgaagcaccg
ccgccgatcacagccgaagtcgtcgctggagcctcgcagccgacgctgacagtggaggaa
acggtcgtcgaagccgttgaaatcgcgaaggcggatgccgcggaggaagtgatcgtggcc
gccgaaaccgtcagcgccagtgccgctccggaaaacgtcgtcatcgcagcggaagacgcc
gctcccagccgcgccgagcagctgcgtggcctgttcgacacggcccgtgaagatgccgcc
acttcaccactgccgtcgcagggcgaagcatcgacagaagcgagccgtaacgcctga
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