Thermococcus aciditolerans: FPV09_01065
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Entry
FPV09_01065 CDS
T07677
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
them
Thermococcus aciditolerans
Brite
KEGG Orthology (KO) [BR:
them00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
them03016
]
FPV09_01065
Enzymes [BR:
them01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FPV09_01065
Transfer RNA biogenesis [BR:
them03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FPV09_01065
Prokaryotic type
tRNA splicing ligases
FPV09_01065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Intein_splicing
LAGLIDADG_3
Motif
Other DBs
NCBI-ProteinID:
QEK13941
UniProt:
A0A5C0SHX6
LinkDB
All DBs
Position
198045..200858
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AA seq
937 aa
AA seq
DB search
MVPLKRIDKIRWEIPKYDKRMRVPGRVYADDQLIEKMRGDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDVNCLHEETEVISDLGFKIQVKNLPKS
FKRVPLKVYDAKEGHNDHSRIMLVAERDSDEEIYEIKLTSGRVLKASGDHPVLTEKGYKK
AEDLKPGDLVAVYPFEGVEYEEPEPRILLTHEDFKNEDRQLVKYLEERGLLPLRMDDPRI
GILARVLGYFIGDGSFDIYREKNGRERMITVFYGDEEGLEALRKDLEFYFNIKASRVYKR
TRKENVRTAWGEFETTGTEYSIKVTSKAFSKLLIKLGAPTGKKTDVDFDVPEWVKNTPKW
IKRNFLAGLFGADGSKPRLMSSYHKYTPNSISLTAVKTKELEESLVKFLNSIKELLAEFE
VTSHVRKVKEYDNRVMYRLVIYSNTREIYNFLSRIGYEYTAQKSYALIFAEYLRRKIVIG
ENISESNLVQRNRKMRELLPDFGSFLKTYGLEGGFVLDRVIEVKRVKSDSKKLYDIGVYH
SAHNFIANGVVVHNCGVRLIRTNLTEKEVRPRIKELVDTLFKNVPSGLGSKGRVRLHWTQ
LDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGANPNAVSQKAKQRGAPQLGSLGSGNH
FLEVQVVDKVFDEKIAEAYGLFEGQVVVMVHTGSRGLGHQVASDYLRVMEKANRKYGIPW
PDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFEEVFKRKAEDMEMSIV
YDVAHNIAKVEEHEVDGKKVTVVVHRKGATRAFPAGHPDVPRAYRDVGQPVLIPGSMGTA
SYVLAGAEGSMRETFGSSCHGAGRLLSRKAATRQYRGDRLRNELARQGIYIRAASLRVVA
EEAPGAYKSVDNVVNVVHQAGIANLVARMRPMGVAKG
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgctgaagaggatagataaaatacgctgggagataccgaagtacgacaagaga
atgcgcgttccgggcagggtttacgctgacgaccagctgatagagaagatgaggggagac
agaacccttgagcaggccgccaacgttgcgatgcttcctggaatctacaagtactccatc
gttatgcccgacggtcaccagggctacggcttcccgatcggcggtgtcgcggcgtttgat
gtgaaggagggcgttataagccccggaggagtgggctacgatgtgaattgtctccacgaa
gaaactgaggttataagcgacttggggtttaagattcaggtaaagaatcttcccaaatca
ttcaaaagggttccactaaaggtttacgatgcaaaagaaggccacaacgaccactctaga
ataatgttagtcgcggagagggatagcgacgaggagatatacgaaataaaactcacaagt
ggaagggttcttaaggcctcgggagaccacccggtgcttactgagaaaggatacaaaaaa
gcagaggacctaaagcccggtgatttggtagcagtctatccattcgaaggagtcgagtac
gaagaaccagagccaaggattcttttaactcacgaagatttcaaaaacgaggacagacag
ctggttaagtacttggaagagagaggactgctcccactgaggatggacgacccaaggata
ggtatcctggcgagggtactgggatactttataggcgatggatcctttgacatttaccgt
gagaagaacggaagggaaaggatgatcacagtcttctacggagacgaggaaggactagag
gctcttaggaaggatcttgagttctactttaacatcaaagcatccagagtctacaagaga
accagaaaggaaaacgtcaggactgcatggggagagtttgagaccaccggaactgagtac
tcaataaaggttacatcgaaagcgttttcaaagcttctcatcaagctgggtgccccgacg
ggcaagaaaactgacgttgatttcgacgtcccagagtgggtcaaaaatactcccaaatgg
attaagcggaacttcttggcggggcttttcggcgcggacggaagcaaaccaagattaatg
tccagctatcacaagtacactccaaattctatatccctaaccgcagttaagaccaaagaa
cttgaagaaagccttgtgaagttcctgaattcaattaaagaactgctggcagagtttgaa
gtcacctcacatgtaagaaaagtcaaagagtacgacaatcgggtaatgtacaggcttgta
atatactccaacacaagagagatatacaacttcctctctaggattggctacgaatacact
gcccagaagtcctacgcactgatcttcgcggaatacttgagaagaaaaattgtgatagga
gaaaacatctcagagagcaacttagtccagagaaacagaaagatgagagaacttctgcct
gactttgggagcttcctcaaaacctacgggcttgaaggcggcttcgtgcttgatcgggta
attgaagttaagagggtaaaaagcgactctaaaaagctctacgacatcggcgtctaccac
agcgcccacaacttcatagccaacggcgtcgtcgttcacaactgcggcgtccgcttaatc
aggaccaacctcaccgagaaggaagtaagacctcgcatcaaggagctcgtggacacgctc
ttcaagaacgtcccgagcgggctgggaagcaagggaagggtgagactccactggacgcag
cttgacgacgttctcgctgacggtgccaagtgggcagttgacaacggctacggctggaag
gaggacttggagcacctcgaggaaggcggaaggatggaaggtgcgaatccaaatgccgtc
agccagaaggcgaagcagaggggtgctccgcagctcggttccctcggctcaggaaaccac
ttccttgaggttcaggtggttgataaggtcttcgacgagaagatagcggaagcctacggc
ctcttcgaggggcaggttgttgtcatggtccacaccggttcaaggggtctcggccaccag
gtggcgagcgactacctccgcgtcatggagaaggccaacagaaagtatgggattccctgg
ccagacagggaactcgtcagcgttcccttccagagcgaggaggggcagaggtacttcagc
gcgatgaaggctgctgcaaacttcgcctgggccaacaggcagatgataacccactgggtc
agggagagctttgaggaggtcttcaagaggaaggctgaagacatggagatgagcatcgtc
tacgacgtcgcccacaacatagccaaggtcgaggagcacgaggtcgatgggaagaaggtt
accgtcgtcgtccacaggaagggagcgacgagggccttccctgccggccacccggacgtt
ccgagggcttaccgcgacgtcggccagcccgtcctgattcccggctcgatggggacggcc
agctacgtcttagccggcgccgaaggctcgatgagggagaccttcggcagctcgtgccac
ggcgccggaaggttgctcagcaggaaagctgcaacgaggcagtaccgcggcgacagactg
aggaacgagctcgcaaggcagggaatctacatccgcgcggcgtctctcagagtcgttgcc
gaggaggctccaggggcctacaagagcgttgacaacgttgtcaacgtcgtccaccaggct
ggcatagcgaacctcgtggcgagaatgcgcccgatgggcgtcgccaaggggtga
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