Thermococcus aciditolerans: FPV09_04305
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Entry
FPV09_04305 CDS
T07677
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
them
Thermococcus aciditolerans
Pathway
them03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
them00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPV09_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
them03019
]
FPV09_04305
Messenger RNA biogenesis [BR:
them03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FPV09_04305
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
FPV09_04305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
EXOSC1
OB_RRP5_4th
Auto_anti-p27
Zn_ribbon_PaaD
S1_RRP5
Zn_ribbon_IS1595
DZR_2
Zn_ribbon_3
A2L_zn_ribbon
DZR
Trm112p
Motif
Other DBs
NCBI-ProteinID:
QEK14454
UniProt:
A0A5C0SLZ2
LinkDB
All DBs
Position
complement(782889..783479)
Genome browser
AA seq
196 aa
AA seq
DB search
MDEKNGAKSGDIVLPGDYLGVIEEYFPGEGVKEENGELYAVRAGKVVIDQDKMEISVEPV
TDTPPLPQVGDVVIANVIEVKPQAAIVQLIKIEGREDDREIATSKLAGIHISQVRDGYVE
GMSTEFKVGDVVRARVVATEKSPIQLSTKGPDLGVVYALCSRCRTPLVRRGDRLICPRCG
SVETRKLSTLYRKMRV
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaagaatggcgcaaaaagcggtgatatcgttcttcccggtgactacctcggc
gtcatcgaggagtacttcccaggggaaggtgttaaggaagagaacggcgagctctacgcc
gtgagagcggggaaggttgtaatcgaccaggacaagatggaaatcagcgttgaacccgtc
accgacaccccacccctgccgcaggtgggcgacgtggtcatagcgaacgtcatagaggtc
aagccgcaggcggcgatagtccagctcattaaaatcgaaggaagggaggatgacagggag
atagccacctcgaagctcgccggaatccatatatcccaggtcagggacggctacgttgag
ggcatgtccacggagttcaaggtcggcgacgttgtgagggctagggtcgtggccactgag
aagagtcccatacagctctccaccaaagggccggacctcggtgtggtctatgccctctgc
tcccgctgcaggacccccctggtgaggcgcggcgacaggcttatctgtccgcgctgcgga
agcgttgagacgcggaagctctccaccctttacaggaagatgagggtgtga
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