Thermococcus aciditolerans: FPV09_06695
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Entry
FPV09_06695 CDS
T07677
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
them
Thermococcus aciditolerans
Pathway
them03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
them00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPV09_06695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
them03019
]
FPV09_06695
Messenger RNA biogenesis [BR:
them03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
FPV09_06695
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
FPV09_06695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
QEK14835
UniProt:
A0A5C0SK11
LinkDB
All DBs
Position
complement(1190114..1190923)
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AA seq
269 aa
AA seq
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MEIMAGIMRDHILALLKEGKRVDGRGLEDYRDLEIKVNVIEKAEGSAWVRLGNTQVLVGV
KVDMGEPFPDLPDRGVITTNVELVPLASPSFEPGPPDENAIELARVVDRGIRESQAVELE
KLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALLSTRMPKVVYNEETDEVEVLDE
YEPLPVRRIPIPVTMAKIGPNILVDPNLDEERVMDGRIIITTDENAMISSVQKSEGGSFK
LEEVMYAVDTAIKKAAEIREKVLEAVKAE
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggaaataatggcgggcataatgcgcgaccacatcctggcgctcctcaaggaaggcaag
cgcgtggacggccgcggccttgaagactacagggacctcgaaatcaaggtcaacgtcatc
gagaaggccgagggctccgcatgggtcaggctcggcaacacccaggttctcgtgggcgtg
aaggtcgacatgggagagcccttccctgacctcccggacaggggcgtcataacgaccaac
gtggagctcgttccccttgcctccccgagctttgagcccggcccgccggacgagaacgcc
atagaactcgcccgtgtggttgacaggggtataagggagagccaggcagttgagcttgag
aagctcgtcatagttccgggcaagctcgtccgcgtcgttttcatagacgtccacgtcctc
gaccacgacggcaacctcctcgacgcgagcggcatcggcgcgatagcggccctgctcagc
accaggatgccgaaggtggtctacaacgaggagaccgacgaggtcgaggttctcgacgag
tacgagcccctcccggtcaggaggataccgataccggttaccatggccaagatcggtccg
aacatcctcgttgacccgaacctcgatgaggagcgcgtcatggacggcaggataatcata
accaccgacgagaacgccatgatatcctccgtccagaagagcgagggcggttcgttcaag
cttgaggaggtcatgtatgcggttgacaccgcgataaagaaggccgccgagatacgggag
aaggttcttgaggccgttaaggccgagtga
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