Thermoflavifilum sp.: IMW88_01345
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Entry
IMW88_01345 CDS
T09844
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMW88_01345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theo03019
]
IMW88_01345
03016 Transfer RNA biogenesis [BR:
theo03016
]
IMW88_01345
Enzymes [BR:
theo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IMW88_01345
Messenger RNA biogenesis [BR:
theo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IMW88_01345
Transfer RNA biogenesis [BR:
theo03016
]
Prokaryotic type
tRNA degradation factors
IMW88_01345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
RNase_II_C_S1
S1_RRP5
Lipase_chap
Motif
Other DBs
NCBI-ProteinID:
QOR76247
LinkDB
All DBs
Position
complement(327951..330185)
Genome browser
AA seq
744 aa
AA seq
DB search
MSLQPITVEFDLGDGRKVEIETGRLARQADGAVTVRMGDCILLATAVAGKEPKEGQDFFP
LIVDYRESFAAAGRIPGSFFKREGKLSDYEVLISRLIDRALRPLFPDDYFCDVQVLVTLI
SSDAEVMPDALAGLAASAALAVSDIPIQELISEVRVARVDGQFIINPSRSQLAAADMDFM
VGATAKNILMVEGESKECLEEDLIQAIQLAHEAIKKQIAAQEQLREKAGVKEKRAYPKPH
RNEALKQKISELARDRISAIAHTNTTKQQRTEAFKQLQEEITQALGELPAEDQPLIGYYF
HELQRDIVRNMILDEGRRLDGRGLKDIRPLDMQVDVLPSTHGSAIFTRGETQSLTTVTLG
TPEDELLIETAAISDYSKFILHYNFPPFSTGEVKMMRAPGRREIGHGNLALRSLKQMMPN
GDYPYTVRVVSDILESNGSSSMATVCAGSLALMDAGVPLPKHVGGIAMGLISRPEDGKYA
ILTDILGDEDHLGDMDFKVAGTREGICGVQMDIKVDGLSMDVMREALEQARQARLFILDA
MYQCIPQHRDEPKPHAPRVVKMFIDREFIGAVIGPGGKIIQEIQRETGTTISIEEVGATG
EVSIFSSDKHSLEKAVQWIKGIVAVPTVGETYEGEVKAVMPYGAFVEFLPGRQGLLHISE
VSWKHLDSLEGVLKEGDKIKVKLTGADPKTGKFKLSRKALLPRPEGYHQPPVNAHNRTRS
PRPHARPTSPHPRHGRGNTPDQSE
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgagcttacaacctataactgttgaatttgatctgggcgacggccgtaaagttgaaatc
gagaccgggcggctggcccggcaggccgatggagctgtcaccgtgcggatgggtgattgt
attttgctggctaccgcagttgccggcaaagagcctaaggaagggcaggatttcttcccg
ctgattgtcgactatcgcgaaagttttgctgctgctggtcgtattccgggttcatttttc
aaacgcgaaggtaaattatccgactatgaggtactcatcagtcgcttgattgatcgggct
ttgcgtccgctgttccccgatgattatttctgcgatgtgcaggtgctggttaccttgatt
tcttccgatgcagaggtgatgcccgacgcactggctggactggccgcttcagccgctctg
gcggtatcggatattccgattcaggaattgatttctgaagtacgggtagcacgtgtggat
gggcaattcatcatcaatccatcacgcagccagcttgccgcagccgacatggattttatg
gttggtgccacggcaaaaaatattctgatggtggaaggtgaaagcaaggaatgcctggaa
gaagaccttattcaggccatccagctggcccatgaagccatcaaaaaacagattgccgct
caggaacagctgagggaaaaagccggtgtgaaagaaaaaagagcctatcccaaaccacac
cgcaatgaggcgctcaagcaaaaaatatcagaactggcccgggatcgcatttcggccatc
gctcataccaataccaccaagcagcaacgtacggaagcctttaaacagctgcaggaagaa
attacacaggcactgggcgaattgcccgctgaagaccagcctttaataggctattatttc
catgaacttcagcgagatattgtacgaaatatgattctcgacgaaggccgcaggctcgat
ggccgcgggctgaaggacatcagaccgctggatatgcaggtggatgttttgccttccacg
catggttcggcaatctttacccggggcgaaacccaatcgcttaccacagtaaccctgggt
actccggaagatgagctgttgattgaaacagcggccatatcggattacagcaagtttatc
ctgcattataatttcccgccattttctacaggcgaggtaaagatgatgcgcgctcccggt
cgtcgcgaaataggccatggcaatcttgccctgcgctccttgaagcaaatgatgcccaat
ggcgattatccctacacggtgcgggtggtttccgatatcttagagtcgaatggttcttca
tccatggccacggtgtgtgcaggttcactggcattgatggatgccggcgtgcccctgccc
aagcatgtaggtggcattgccatgggactcatttctcgtccggaagatgggaaatatgct
attctcacggatatcctgggcgacgaggatcacctgggcgatatggattttaaagtggct
ggaacccgggaaggtatctgcggcgtgcaaatggatattaaagttgatggcctgagcatg
gacgtgatgcgggaggcccttgagcaggcacgccaggcccgtttgtttatcctcgatgcc
atgtaccaatgcattccccagcaccgcgatgagcccaaaccgcatgcaccgcgtgtggtg
aagatgttcattgatcgggaattcattggcgctgttattggtccaggcggtaaaattatc
caggagattcaacgggaaaccggtactaccatcagcatcgaagaggtgggggctaccggt
gaggtaagcatattcagcagtgataaacatagcctggaaaaagccgtacaatggattaaa
ggcattgtagccgtacctaccgtgggcgaaacctatgaaggagaggtgaaagccgtaatg
ccttacggagcttttgtagaatttttgcccggcaggcagggattgctccatatctctgag
gtgtcgtggaaacatctcgacagcctggaaggtgtgctgaaggagggagataaaattaag
gtaaagctcaccggtgccgatcccaagaccgggaaattcaaactttcgcgtaaagcactg
ttacccaggccggaaggttatcaccagcctccggtaaatgcccataatcgtacgcgtagc
ccccggccgcatgcgcgtcccacctcacctcatccccggcatggcagaggcaatacgcca
gatcagagcgaataa
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integrated database retrieval system
