Thermoflavifilum sp.: IMW88_01655
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Entry
IMW88_01655 CDS
T09844
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMW88_01655 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
theo03021
]
IMW88_01655 (rpoC)
03400 DNA repair and recombination proteins [BR:
theo03400
]
IMW88_01655 (rpoC)
Enzymes [BR:
theo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMW88_01655 (rpoC)
Transcription machinery [BR:
theo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMW88_01655 (rpoC)
DNA repair and recombination proteins [BR:
theo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMW88_01655 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QOR76303
LinkDB
All DBs
Position
complement(402073..406368)
Genome browser
AA seq
1431 aa
AA seq
DB search
MALKKDNRPKPNFSKVTISLASPDSILERSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVVHIWYFKSLPNKI
GYLLGLSSKKLESIIYYERYVVIQPGIREDKGLNVMDLLTEEEYLEIIDSLPKDNQLLPD
DDPKKFIAKMGAEAIQMLLARINLDELSYSLRNQAATETSQQRKAEALKRLSVVEAFREA
NQHIENRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVERKDA
VIWDILENILKGHPVLLNRAPTLHRLSIQAFQPKLIEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYITKGKRSTPDDPVR
GEGKIFYSPEEVIIAYNEGKIDLHAWIKVRAMVRNGEGKLEKQLIETTVGRVIFNQTVPR
EVGFINALLTKKSLREIIGDIIKLTDVPTTARFLDDIKELGYRMAYKGGLSFSINDLIVP
KIKETLIENAMAEVEEVWENYNMGLITNNERYNQIVDIWSRVDTKITESLIQELAADQKG
FNSVFMMLDSGARGSKQQIKQLAGIRGLMAKPRKSGSTGSEIVENPILSNFKDGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLVDVAHDVVITEEDCGTLRGISISAIKENEEVV
ESLFDRILGRVSLHDIYHPQTDELIVPAGEMITEEIARKIEDSGIESVEIRSVLTCESRR
GVCVKCYGQNLATGQLAQKGDVVGIIAAQSIGEPGTQLTLRTFHVGGVAGSATVESKLTS
HFDGIVHFDGLRTVSYENNEGEKVQVVIGRMGEVRIVDPKADRLLTTHNIPYGSTLLVKE
GQSIKKGDVICTWDPFNAVIISEISGKVRFENIIEGVTYREEADEQTGHREKVVIESRDK
NKIPSLIIEKGKEAKVYNLPVGSHINVNEGDQVKAGQVLVKIPRVIGKLRDITGGLPRVT
ELFEARNPSNPAIVAEIDGVVSFGSVKRGNREIIIESKEGQVKKYLVPLTRHILVQDGDF
VKAGTPLSDGAISPSDILAIKGPYAVQEYLVNEIQEVYRLQGVKLNDKHIEVIVRQMMRK
VTIEDPGDTHFLEGDLVDKFEFLEANDALFDKKVVTDPGDSTNLKAGQIVTLRQIRDENS
MLRRADKKLVEYRDARPATSSPSLLGITRASLGTNSWISAASFQETTKVLSQAAISGKTD
EMLGLKENVITGHLIPAGTGLREFENLIVGSKEEYDILQSSRQAYQFDEEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggctttgaaaaaagataatcgtcccaagccaaatttcagcaaggtaaccattagtctg
gcttcaccggattccattctggagcgctcctatggtgaagtactgaagccggagaccatc
aactaccggacatataagccggagcgcgatgggcttttctgcgaacgcatcttcggaccg
gtgaaagactatgaatgttattgcggcaaatacaaacgcattcgttacaaaggcattgtt
tgtgatcgttgtggtgtggaagtaaccgaaaagaaggtgcgacgtgagcgcatggggcac
atcaagctggttgtgcccgtcgtgcatatctggtattttaaatccttgcccaataaaatt
ggttatctgctggggctttcttccaaaaagctggaatccatcatctattatgaacgttat
gtcgtgattcagcccggtattcgtgaagacaaggggttgaatgtgatggatctgttgacg
gaagaagaatatctggagattattgattcccttcccaaggataaccagctgctgcccgat
gatgatccgaaaaagttcatcgctaaaatgggtgcggaagccattcagatgctgctggct
cgcatcaacctggatgagctatcctattccctgcgcaaccaggccgccacggaaacttct
caacaaagaaaagcagaagccctgaagcggctaagtgtggtggaagctttccgtgaagcc
aatcagcatatcgaaaatcgaccggaatggatggtgatgcagtatatcccggtgattcca
cctgaactcaggccgctggttccgctggatgggggtcgatttgcttcatccgacctgaac
gatctgtatcgccgggtcatcatccgcaacaaccgcctgaaacgactgatcgagatcaag
gcgcccgaagtgattctgcgcaatgaaaagcgtatgctgcaggaagctgtggattcgctg
ttcgataacagccgcaaatccaatgcggtgaaagctgaaggcgggcgtgcactgaagtcg
ctcagcgatgtgctcaagggtaagcagggccgtttccgtcagaatttgttaggaaaacgt
gtggattattccggacgttcggtgattgtggtagggcctgagctgaaactccacgaatgc
ggcctgcctaaagacatggccgctgagctgttcaagccgtttatcatccgcaagctcatc
gaacggggtatcgtgaagacggtaaaatcagccaaaaaattggttgaacgtaaggatgcc
gtgatctgggatatcctggaaaacatcctcaaaggacatcccgtattgctcaaccgggca
ccgacccttcaccgtctttcgattcaggccttccagcccaagctcatcgaggggaaggct
attcagctgcatccgttgacctgtacggcattcaatgccgacttcgacggcgaccagatg
gctgtgcacgtgcccctgagcaatgccgccattctcgaggctcagctgctcatgctttct
tcacacaacattctgaatccgcaaaatggtacgcccatcaccctgccttcgcaggacatg
gtgcttgggctctattatatcaccaagggcaagcgctccactcccgatgatcccgtgcgt
ggcgaaggaaagatcttttattcgcccgaagaggtgattattgcttacaatgaaggcaag
atcgacctgcacgcctggatcaaggtacgggctatggtgcgcaacggtgagggcaaactg
gaaaagcagctcatcgaaaccacggtgggcagagttatttttaaccagactgtccccaga
gaagtagggttcatcaatgccctgctcaccaaaaaatccttacgcgaaatcatcggcgat
atcatcaaacttaccgatgtgcccaccaccgccagattccttgatgatatcaaggaactg
ggttatcggatggcttataaaggcggactttcattcagcatcaacgatttgattgtaccc
aagataaaagaaaccctgatcgaaaatgcgatggccgaagtagaagaagtatgggaaaat
tacaatatgggtttgattaccaacaacgaacggtacaatcaaattgtggacatctggtcg
agggtggataccaaaatcaccgagtcgttgattcaggaactggcggccgaccagaaagga
tttaattccgtgttcatgatgctcgattccggcgcccgcggttccaagcaacaaatcaaa
cagctggccgggattcgtggattgatggccaagcccagaaaaagtggttctaccggatct
gagattgtggaaaatcccatcctttccaatttcaaggatggcttgagtgtgctggaatat
ttcatttccacacacggcgcgcgtaaaggtctggccgatactgcattgaaaacagccgat
gccggttacctgacccgtcgtctggtggatgtggcacacgatgtggtgatcacggaagaa
gattgtggaaccctgcggggaatctccatttcggccatcaaggaaaatgaggaagttgtg
gaatcactcttcgatagaattcttggccgggtttctctgcacgatatttatcatccacag
accgatgagctgattgtgcctgcaggtgaaatgattaccgaagaaatagccagaaaaatt
gaagatagtggtattgaatccgttgagatccgatccgtactcacctgcgaaagccggcgt
ggcgtatgtgtgaaatgctatggtcagaacctggctaccggccagctggcacagaaaggt
gatgtggtgggcatcatcgctgctcaatcgatcggcgagcccggtacccagctcaccttg
cgtaccttccacgtgggtggtgtagcaggctcggctaccgtagaatccaagctcacctct
catttcgacggtatcgtacactttgatggtttgcgtacggtaagttatgaaaacaacgaa
ggagaaaaagtgcaggtggttatcggtcgaatgggcgaggtgaggattgtggatcctaaa
gccgatcgtttgctcaccacgcataatattccttacggatctaccttgctggtcaaagaa
ggccagtccatcaagaaaggcgatgtcatctgcacctgggatccgttcaatgccgtgatt
atctctgagataagcggtaaggtgaggtttgaaaatatcattgaaggggttacctatcgc
gaagaagccgacgagcaaaccggtcacagggaaaaggtggttattgaaagccgggataaa
aacaagattcccagtttaatcatcgaaaagggcaaagaagctaaggtttataacctgccc
gtgggttcacatatcaatgtgaacgaaggcgatcaggtaaaggccggccaggtgctggtg
aagattcctcgtgtcatcggtaagctccgcgatattaccggtggtctgccgcgggtaacc
gaattgtttgaagcacgtaatccttccaacccggctatcgtggctgaaattgatggggtg
gtgagcttcggtagcgtgaaaagaggcaatcgagaaatcatcattgagtctaaagaaggt
caggtgaagaaatacctggtgccactgacccggcatattctggtacaggatggtgatttt
gtgaaagccggtactccgctttccgatggcgccatcagccccagcgatattctggctatc
aaaggaccgtatgccgtgcaggaatatctggtcaatgaaatccaggaagtgtatcgcttg
cagggtgtgaagctgaatgataagcatattgaggtgatcgtccggcagatgatgcgcaag
gtaaccatcgaggatccgggtgatacgcatttcctggaaggcgacctggttgataaattt
gaatttctcgaggccaatgatgcattgttcgacaaaaaggtggtgaccgatccgggcgat
tccacgaacctgaaagccggacagatcgtaaccctgcggcaaatacgcgatgaaaattcc
atgcttcgtcgggccgataaaaaactggttgaataccgcgatgctcgtccggccacttcc
agtccatctttgcttggtatcacccgcgcttcgctgggtaccaatagctggatatcggca
gcatctttccaggaaaccaccaaagtgctctcgcaagcggctatcagcggtaaaaccgat
gaaatgctgggcctgaaagagaatgtcatcacgggccatctgatacccgccgggaccgga
ttgcgcgaatttgaaaatctgattgtgggttcaaaggaagaatacgatatcctgcagtcg
agccgtcaggcttatcagtttgacgaagaagaataa
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integrated database retrieval system
