Thermoflavifilum sp.: IMW88_04625
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Entry
IMW88_04625 CDS
T09844
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMW88_04625 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theo03019
]
IMW88_04625 (recQ)
03400 DNA repair and recombination proteins [BR:
theo03400
]
IMW88_04625 (recQ)
Enzymes [BR:
theo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMW88_04625 (recQ)
Messenger RNA biogenesis [BR:
theo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMW88_04625 (recQ)
DNA repair and recombination proteins [BR:
theo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IMW88_04625 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ-1-like_HTH
RecQ_Zn_bind
HRDC
ResIII
HTH_40
zf-CXXC
B56
Motif
Other DBs
NCBI-ProteinID:
QOR76823
LinkDB
All DBs
Position
1115794..1118100
Genome browser
AA seq
768 aa
AA seq
DB search
MGKRTVKAHAVQEAVTEDYSRLSSTSTNTTDQEYREITSSEYLHAQLKRHFGFDAFKGNQ
EKIIRSILSGRDTFVIMPTGGGKSLCYQLPALISPGCAIIVSPLIALMKNQVDLIRSYSS
KDHVAHFLNSTLSKTEIRRVKADLSSGKTKMLYVAPETLTKADNLSFFRELHISFFAVDE
AHCISEWGHDFRPEYRRLREMINAINDQLPVIALTATATPKVQSDILKNLELKNPNIFIS
SFNRPNLYYEIRPKRKKDQTLKEIVRFIMQHRGKSGIIYTLNRKTTEEIADMLVANGIKA
VAYHAGLDAATRTQRQDMFLMEEVEVIVATIAFGMGIDKPDIRYVIHYNIPKSLENYYQE
TGRAGRDGLEGKCICFYSHKDIHKLEQLMRDKPLSEREMGAQLINEMVAYAESSVCRRKF
ILHYFGEQFEQENCGHCDNCLNPKEKIEVKNRVTIVLRTIQALNERFGIEYLVDMICGKP
TPQITTYRHDELPEFGSGKEHDAHFWNSLIRQMMLEGLVEKDIEEYGLLKITEKGKHFLA
HPYPIYFSLNHQFDEEEVDDEDTPTGPGAGAVDPVLFEMLKDLRKKVAKEKGLPPFVVFL
ETSLEDMATQYPTTLEELERIQGVSKGKALKFGKPFVEMIQQYVEEHDIEKPDDFVMKSV
VNKSGLKVFIIQNIDKKIPLETIARSRDLTLSQLLDEMETIVASGTRLNVDYCIDEELDE
YAKEEIMEYFKHCETSSLEAAREALSDGDYTVEQLKLMRIKFLSEYGN
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagaacagtgaaggctcatgccgtgcaggaagccgtaacggaggattattcc
aggttatcttccacttcaaccaacacaaccgatcaggaatacagggaaatcacttcgagt
gaatatctgcatgctcaactgaaacggcatttcggctttgacgctttcaaggggaatcag
gaaaaaatcatccggagcattttatcgggtcgcgacacatttgtgatcatgcctacgggt
ggcggcaaatcgctttgctaccagcttcctgcacttatcagtccgggttgtgccattatt
gtatcacccctgattgccctgatgaagaatcaggtggatttgatccgctcctatagcagt
aaggatcatgtagcacattttttaaactccacgctctccaaaacagaaatccggcgggtg
aaggccgatctgtcatcgggcaaaaccaaaatgctatacgtggcaccggaaacccttacc
aaagcggataatctcagttttttccgcgagctgcatatttctttttttgccgtggatgaa
gcccattgcatatccgaatgggggcatgattttcgtccggaatatcggcgcctgcgggaa
atgatcaacgccatcaacgatcagttgcccgtcattgcgctcacggccaccgccacacct
aaggtacagagcgatatcctgaaaaatctggaactcaaaaatcccaatatttttatttct
tcctttaatcggcctaatctgtactatgagatccgccccaaacgcaaaaaagatcagacg
ctgaaggaaatcgtccgtttcatcatgcagcatcgcggcaagagtggaattatctatacc
cttaatcgcaaaactacagaagagatagccgatatgctggtggccaacggcatcaaggct
gtggcttatcatgccggattggatgctgctacccgcacccagcggcaggatatgtttctt
atggaagaagtggaggtcattgtagcgaccattgcctttgggatgggtattgataaaccc
gatattcggtatgtgattcattacaatattcccaagagcctggagaattattatcaggaa
acaggccgggccggccgggatgggctggaaggcaaatgcatctgtttttactcccataag
gatatccacaagttagaacaattgatgcgcgataagccgctcagtgagcgtgaaatgggt
gcccagctcatcaatgaaatggtggcttacgccgagagctccgtatgccgcaggaaattt
atcctgcattattttggagagcaatttgaacaggaaaactgtggccattgtgataattgc
ctcaaccccaaagaaaaaatcgaagttaaaaaccgggtaaccattgtgttgcgcaccata
caggcgctcaatgagcggttcggtattgaatatctggtggatatgatctgcggtaagccc
acgccacagatcaccacctatcggcatgatgaacttcctgaatttggcagcggcaaagaa
cacgatgctcacttctggaattcgctcattcgccagatgatgctggaagggctcgttgaa
aaagatatagaagagtatggcctgttgaagattaccgaaaagggcaaacattttctcgct
catccctatcccatctatttttccctgaatcatcaattcgatgaagaggaagttgatgat
gaggatacacccactggcccgggtgcaggtgcggtagatcccgtattgtttgaaatgttg
aaggatttaaggaaaaaggtggccaaggaaaaaggattgcctccattcgtggtatttctt
gaaacctctctcgaagacatggccacccagtatcctactacgctcgaagaactggagcgc
attcagggtgtgagcaagggtaaggccctaaaattcggtaaacctttcgtggagatgatt
cagcaatatgtggaagagcatgatatcgaaaagcccgatgattttgtgatgaaaagtgtg
gtgaacaaaagcggcctgaaagtattcattatccagaatatcgataaaaaaataccgctg
gaaacaattgcccggtcgcgtgatctcaccctctcgcaattactggatgaaatggaaacc
attgtagccagcggcacccgcctgaatgtggattattgcattgacgaggagctggatgag
tatgccaaggaagaaattatggaatatttcaaacattgtgagacctccagtctcgaagct
gcccgggaagccctcagtgacggcgattatacggtagagcaactcaaactgatgcgcatc
aagtttctcagtgaatatggcaattga
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