Thermoflavifilum sp.: IMW88_04670
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Entry
IMW88_04670 CDS
T09844
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
theo
Thermoflavifilum sp.
Pathway
theo02020
Two-component system
theo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IMW88_04670 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IMW88_04670 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
theo03021
]
IMW88_04670 (rpoN)
Transcription machinery [BR:
theo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IMW88_04670 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
HTH_IclR
PTHB1_hp
NES_C_h
HTH_12
MarR
Motif
Other DBs
NCBI-ProteinID:
QOR76831
LinkDB
All DBs
Position
1128594..1130099
Genome browser
AA seq
501 aa
AA seq
DB search
MLRQTQQQKLLQKLSPQQIQLMKLLQIPTANLEERIKQEIEENPALEFGDDGHDEDVPLD
EPQPLTQENEDHDEEMNDEEPDGSADEYENIDVSEYLMEDDDDIADYRLRDDHYPEMDET
RVMPIRVETSFQDYLLDQLGMLPLDERQQMIARQIIGSIDDDGYLRRDASAIADDLSFSQ
NIFTDAQEVEQIIAMVQTFDPPGVCARNLQECLLLQLKRKSPADPLVRHAQTVLTDYFDA
FIKKHYEKIQRGMGLTDEELKAVIQLITHLNPKPGNNFAPDNKAESYIVPDFFIINNNGK
LELTLNARNAPDLRISSEYRDMLRDYEKGAKKDKRQREAVLFIKQKIDAAKWFIDAIKQR
QHTLLSVMQTIMDYQRDFFLTGDETQLKPMILKDIAERTGLDISTVSRVANSKYVQTEYG
TYPLKYFFSESLSTESGEEVSTREVKKILLDLIENENKRKPLSDEMLTRLLQEKGYNIAR
RTVAKYREQLNIPVARLRKQL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgctcagacaaacacaacagcaaaaactcctgcaaaaactctctccccagcagattcag
ctcatgaagctgctgcaaatccccacagccaacctggaagaacgcatcaaacaggaaata
gaagaaaatcccgcgctggaattcggcgatgacgggcatgatgaagatgtacccctggac
gaaccacaacccctcacacaagaaaatgaagatcatgatgaggagatgaacgatgaagag
cccgatggcagtgcagatgaatatgaaaacatcgacgtatcggaatacctgatggaggat
gatgacgatattgcagattatcggctccgggacgatcattatcccgaaatggatgaaacc
cgcgtcatgcctattcgggtggaaacctcttttcaggattatttgctggatcagctgggc
atgttgcccctggatgaacgccagcaaatgattgcccgtcagatcattggcagtattgac
gatgatggttatctcaggcgcgatgcatcggccattgccgatgatttgtcgttttcccag
aatattttcaccgatgcccaagaggtggagcagatcattgccatggttcaaacgtttgat
ccacccggcgtttgcgcccgcaatctgcaggaatgcttattgcttcaactcaaacgaaaa
tcacccgccgatccgctcgtcaggcacgcccaaaccgtgcttaccgattattttgacgca
ttcatcaaaaagcattatgaaaaaatccagcggggaatgggattgactgatgaagagctg
aaggccgtcatccaactgattacccacctcaatcccaaacccggcaataatttcgcaccc
gataacaaagccgaaagttatatcgttcccgactttttcatcatcaacaacaatggcaaa
ctggaacttaccctgaatgcccgtaatgctccagacctgcgcatctcttccgaatatcgg
gacatgttgagggattatgaaaaaggagcaaaaaaagataaacgtcagcgtgaagccgta
ttattcatcaaacaaaaaatcgatgccgccaaatggtttattgacgctattaaacaacgc
cagcataccctgcttagcgtcatgcaaaccattatggattatcaacgcgatttcttttta
accggcgacgaaacccagctgaaacccatgatcctgaaagatattgccgaacgtaccgga
ctggatatttccaccgtttctcgtgtggccaacagtaagtacgtgcaaacggaatatggt
acctatccgctgaaatatttcttttccgaatcattgtcaaccgaaagcggagaagaagta
tccacccgcgaagtgaaaaagattttgcttgacttaattgagaatgaaaacaaacgaaaa
cccttgagtgatgaaatgctcacgcgcctgcttcaggaaaagggttataatattgcccgg
cgaaccgtggccaaatatcgagagcagctgaatattccagttgcccgtttgcgcaagcaa
ctctaa
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