Thermoflavifilum sp.: IMW88_05355
Help
Entry
IMW88_05355 CDS
T09844
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IMW88_05355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
theo03400
]
IMW88_05355 (mfd)
Enzymes [BR:
theo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IMW88_05355 (mfd)
DNA repair and recombination proteins [BR:
theo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IMW88_05355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QOR76957
LinkDB
All DBs
Position
complement(1299373..1302792)
Genome browser
AA seq
1139 aa
AA seq
DB search
MDPQDVLRRFQDDDRLQTLAERLPSSTAAIVSLTGLAGSAPAMIAAALWENAPFNHVFIL
NDKEEAAYFHNDLEQLSRALDIFFFPDSFKSPRRFDHVQKSHIMLRTEALMHFSEPTARK
KMLVTYPEALLEKVAPPEQYTTQSVALEVGQRLQVEALLEKLIGLGFERTDFVYEPGQVA
IRGGIVDIYSYGNEKPYRIELSGEDIESIRIFDPETQLSERKIRQVTLLPNLENPQLARD
RVNLISFLPPQTIWWIKDLALLQDALQQQERLLDESLQQPIHAVLDEESGKTLSFQREDF
CSAESWIQLLLQCRVIEFGKRQVHPQASMAFHFHMAEQPSFNRQFELLIHDLKQYQEKKY
ALLLAAENPRQIQRLQAIFDDLQAGVLLSPLPISLSKGFVDHDHQLVCYTDHQIFERYHK
YHIRQAYSKNKALTLKALKELQPGDYVVHMDHGIGIFSGLQKIEVNGHIQEAIRIIYKDN
DILYVNINSLHKISKYVGKEGTTPRIHKLGSDTWQKLKEKTKSKVKDIAADLIRLYAERK
ARKGFAHSPDTYLQHELEASFIYEDTPDQSKATEDVKRDMESPEPMDRLICGDVGFGKTE
IAIRAAFKTVVDGKQAAVLVPTTILAYQHYKTFSERLQNFPCTVDYINRFKSAKERKETL
QKLKEGKIDIIIGTHALLGKEVEFKDLGLLIIDEEQKFGVAAKEKIRQLKTNVDTLTMTA
TPIPRTLQFSLMGARDLSIINTPPPNRQPIETEIISFDEQVIRDAIYYEIERGGQVFFIH
NRVQNIGEIKNLIQSLCPDVSIAVAHGKMEGHQLEQVMLDFMNRKYDVLVCTNIVESGLD
MPNVNTIIIHNAHQFGLSDLHQLRGRVGRSNKKAFCYLIAPPLSTLPGDSRKRLQAIEQF
TDLGSGFQIAMRDLDIRGAGNLLGAEQSGFMAEMGLDMYQKILDEAVRELKQHEFRDLFK
AQMERDADYVSDCTIDTDLEILIPDDYVENIAERLSLYQELNQIETEDRLRAFAQELEDR
FGPMPQPVIDLLTAMRCRWMGVKLGFEKIILKEGKLRCYFNSNPDSPYFESPTFQRILQF
VQQEIHQARLKQIGKNFMLVMDHMESIDELETLLTRMIHFIHPDAYASQMEKVKPAASK
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcaggatgtgttgcgcagatttcaggatgatgaccgccttcaaacgctggcg
gaacggcttccctcttccaccgctgcaattgtctctctaacagggctcgccggctcggct
ccggccatgatagcggcggcgctatgggaaaatgcgcctttcaatcatgtgtttattttg
aacgataaagaagaagcagcctatttccataatgatctggaacaactatcccgtgcactg
gatattttctttttcccggattcttttaaatcgccccgccggttcgaccatgtgcagaag
agccatatcatgctgcgcacggaagcgttgatgcatttttcagaaccaacggcccgcaag
aaaatgctggtcacctatccggaagcgttactggaaaaagtggctcctcccgaacaatat
acgacacaatcggttgccctggaagtaggccagcggctgcaggtagaggccttgctggaa
aaactgatcgggctcggcttcgagcgcaccgattttgtatatgaacccggacaggtggcc
atccgcggcggaattgtagatatttattcatacggaaatgaaaagccttatcgcattgaa
ttatccggtgaagacattgaatcgattcgcatatttgacccggaaacccagctgagtgaa
cgcaaaatcaggcaggtaacccttttgccaaatctcgaaaatccacagcttgcccgcgat
cgcgtaaacctcatcagctttttgccgccacaaaccatctggtggataaaagacctggca
ttgctgcaggatgcccttcagcaacaggaacgcttgcttgatgaaagcctgcagcaaccc
attcatgccgtcctcgatgaagaatccggtaaaacactcagctttcagcgcgaggatttt
tgttcggccgaaagctggattcagcttttgttgcaatgccgcgtcattgaattcggaaaa
cgtcaggtacatccgcaagcttcgatggcgttccattttcacatggccgaacagcccagc
ttcaatcggcaattcgagctgctgattcatgatttgaaacaataccaggaaaagaaatat
gccctgctgctggctgctgaaaaccccagacagatccagcgtctgcaggccatcttcgac
gatttgcaggcaggtgttctactgtcgcccctacccataagcctcagcaaaggatttgtg
gaccatgatcatcagctggtttgctataccgatcatcaaatctttgaacgatatcataaa
taccacatccgacaggcttacagcaaaaacaaggctttaacactgaaagccctgaaagaa
ttacaacccggcgattacgtggtgcacatggatcatggtattggtatcttcagcggcctg
cagaaaattgaagtcaacggtcatatacaggaagccattcgcatcatctacaaagacaat
gatattctctatgtgaatatcaattccctgcacaaaatcagcaaatatgtaggaaaagaa
ggtacaacacctcgcatacacaaactgggcagcgatacctggcagaagttaaaggaaaaa
accaaatcaaaagtcaaggacatagccgcagacctcattcgcctgtatgccgaacgcaag
gccagaaaaggatttgcccattcgcccgatacgtatttgcaacacgagttagaggcctca
ttcatctacgaagatacgcccgaccagagcaaggccactgaagatgtaaagcgtgatatg
gaatcacccgaacccatggatcggctgatctgcggtgatgtgggttttggcaaaaccgaa
atagctatacgcgccgcttttaaaactgttgtcgatggaaaacaggcagccgtattggta
cccacgaccatactggcctatcaacattacaaaaccttttccgaaagactgcaaaatttc
ccctgcacagttgattacatcaatcgttttaaatcagctaaagaaaggaaagaaacactc
cagaaattaaaggaaggaaaaatcgatatcatcatcggtacacatgcactcctgggaaaa
gaagttgagtttaaagacctgggattactgatcatcgatgaagaacaaaaatttggcgtg
gcagctaaagaaaaaatcagacaattaaaaacgaatgtagatacattgacgatgacggca
acacccattccgcgcacactacaattttcgctgatgggtgctcgtgatctgtcgatcatc
aatacaccaccgcctaatcgacagcccattgaaaccgaaatcatttcttttgatgaacag
gtgatcagagatgcgatttattacgaaatagaaagaggcggccaggtgttttttatacac
aatcgcgtacaaaatataggtgaaatcaaaaaccttatccagtcgctttgccccgatgta
tccattgcagtggcccatggtaaaatggaagggcatcaattagaacaggtgatgctggat
ttcatgaatcgaaaatatgatgtgctggtttgtacaaatatcgtggaaagcggactggat
atgccaaatgtaaacaccatcattattcacaatgcacatcagtttggactcagtgatctg
catcagcttcgcggacgtgtggggcgaagcaataaaaaagcattctgttatctcattgct
ccacccttgagcactttgccgggtgatagccgaaaacgactgcaggctattgaacagttt
accgacctgggtagtggatttcagatagcgatgcgcgatctggatattcgtggagccggc
aacttgctgggagccgaacaaagcggattcatggctgaaatgggattggatatgtatcaa
aaaatactggatgaagccgtgcgagaattgaaacaacatgaattccgtgatctgttcaaa
gcccagatggaacgcgatgccgattatgtgagtgactgcacgattgataccgacctggaa
atcctgatccctgacgattatgtagaaaacattgcagagcgcctgagcctgtaccaggaa
ctgaatcaaattgaaacggaagaccggcttcgcgcatttgcacaagaactggaagatcgc
tttggtccaatgccgcaaccggtcatcgatttgctcacggccatgcgttgccgctggatg
ggcgtgaaattaggtttcgagaaaataatccttaaagagggaaaactcaggtgttatttc
aacagcaatccggattctccctactttgaatcacctacttttcagcgtatcctgcaattt
gtacaacaggaaattcatcaggcgcgactcaagcaaatcgggaaaaactttatgcttgtt
atggatcatatggaaagcatcgatgagctggaaacgctgctgacacgtatgatacacttt
attcatcccgatgcctacgcatcccagatggaaaaagtaaagcctgccgcaagcaagtaa
DBGET
integrated database retrieval system
