Thermoflavifilum sp.: IMW88_07030
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Entry
IMW88_07030 CDS
T09844
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03410
Base excision repair
theo03430
Mismatch repair
theo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IMW88_07030 (recJ)
03430 Mismatch repair
IMW88_07030 (recJ)
03440 Homologous recombination
IMW88_07030 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
theo03400
]
IMW88_07030 (recJ)
DNA repair and recombination proteins [BR:
theo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
IMW88_07030 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
IMW88_07030 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMW88_07030 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QOR77156
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Position
1674371..1676059
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AA seq
562 aa
AA seq
DB search
MLILQQQLQLRPLWCRLLVQRGIKNYTEAYRFFRPSFSHLHDPFLMPDMHRACERIYDAI
TRNEPILIFGDYDVDGTTSVAILYDYLQQRGANVSFDVPDRLREGYGLSMAAVDRAIQSH
ARLLITLDCGMKDISSIARARQAGMDVIVCDHHLPGAVLPDACAILNPLLHRPSTEAYPY
SALSACGITFKLIQALDAGGKTDVNILDYLDRVALSIAADIVPLTGENRTLLALGLKQMN
LHPSTGMLALIEASGLSRDPSCPIGMRELGFVLAPRVNAAGRMKDAHTAVRLFTEKDPQN
ARELAEELHQRNQQRMENDRNIAQEAMEWIENHPEEQQRKTIVVYQPHWHKGVIGIVASR
LVEWYFKPTVVLTAADDQQLAGSARSVPGFNLYQAIDACGHLLERYGGHDYAAGLVLPAH
HLDAFRETFENVVSSTIQDHQLMPAIYIDAAIRPEEITPAFIRMLKQFEPYGMENEPPVF
LMSKLRSITNIQPLKNDHLKFQIQRNNLPPLEVVGFQMAHYFDLFRQQKPIDICFTIEEN
VWNGQSSIQLKLCDMRITQASI
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcttatattgcaacagcaattgcagctaaggcccctgtggtgtcggctgctcgtgcaa
agaggaattaaaaactacacagaagcttatcgtttcttcaggccttcgttctcacatcta
catgatccttttctcatgcccgatatgcatcgggcctgtgagcgcatatatgatgctatc
acgcgtaatgagcctatcctcattttcggtgactatgatgtggatggcaccacttcggtg
gccattttgtatgattacctgcagcaacggggggcaaatgtaagtttcgacgttccagac
aggttgagggaagggtatggtctttctatggcagccgtggatcgggccatacaatcgcat
gccaggttgttaatcacgcttgattgtggcatgaaagatatctcatccatagcccgtgca
agacaggccggaatggatgtgattgtatgcgatcatcatctgccaggcgcagtattgccg
gatgcatgtgcgatattaaatccattgcttcaccgcccatccactgaagcttatccttac
agcgcattatcggcctgtggcatcacgtttaaattgattcaggctttagatgccggtgga
aagacggatgtcaacattttggattatctggatcgggtggcgctcagcattgctgctgat
attgtgccgcttaccggcgagaaccgaacactgctggctttaggattgaagcaaatgaac
cttcatccttccacgggtatgcttgccctgatagaagccagtggattgtctcgcgaccca
tcttgcccgatcgggatgcgggagctgggatttgtattggcgccacgggtaaatgcggca
gggcgcatgaaagacgcacatacggccgtgcgattgtttacggaaaaagatccgcaaaat
gcaagggaactggccgaggaattgcaccagcgcaaccagcaacgcatggaaaacgaccga
aatatagcgcaggaagccatggaatggattgaaaaccatcccgaggaacaacaacgtaaa
accattgtggtttatcaaccccactggcataagggtgtcattggcatcgttgcatcgcga
ctggtggaatggtattttaaacctactgtggtgctcactgcagccgatgatcagcaactg
gcaggctcagctcgctcggtgccaggctttaatctgtatcaagccatcgatgcatgcggt
catttactggaacgttacggcgggcatgattatgcagcaggacttgtgttgcctgcacat
catctggatgcattccgggaaacatttgaaaacgtagtatcgtcaaccattcaagaccat
caactcatgcccgctatttacattgacgccgctattcgtcccgaagaaatcacgcctgct
tttatccggatgctgaagcagtttgagccttatggcatggaaaatgaaccacccgtgttt
ctcatgagcaaactgcgttccataacgaatatccagcctttgaaaaatgatcatctcaag
tttcagatccagcggaataacctgccgcctttagaagttgtgggttttcaaatggcccac
tattttgatttatttcgtcagcaaaaacccatcgatatatgttttaccattgaagaaaat
gtctggaacgggcaatcctccattcagctaaaattatgtgatatgcgtatcacccaggcc
tcaatttga
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