Thermoflavifilum sp.: IMW88_08530
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Entry
IMW88_08530 CDS
T09844
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
theo
Thermoflavifilum sp.
Pathway
theo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMW88_08530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theo03019
]
IMW88_08530
03009 Ribosome biogenesis [BR:
theo03009
]
IMW88_08530
Enzymes [BR:
theo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMW88_08530
Messenger RNA biogenesis [BR:
theo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMW88_08530
Ribosome biogenesis [BR:
theo03009
]
Prokaryotic type
rRNA helicases
IMW88_08530
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
AAA_19
AAA_25
CMS1
AAA_22
NAT10_TcmA_helicase
ATP-synt_E_2
Motif
Other DBs
NCBI-ProteinID:
QOR75399
LinkDB
All DBs
Position
complement(2010087..2011784)
Genome browser
AA seq
565 aa
AA seq
DB search
MQTENSFQALGISEPLLAGVRDMGFEHPTPVQQQAIPRLIAQQSDTIVLAQTGTGKTAAF
GLPLLQHIDLSQRHIQALILSPTRELALQITHDLREMGKYLNGLHIATVYGGSSIQQQIR
QLRQGVQIVVATPGRLMDLMQRQVVQLQSVRWVILDEADEMLNMGFREDIHFILQHATHR
QCCWLFSATMPAEIRQIIRQFMHEPAEIVVGAKNTVASGISHEYYVTHAQHKFETLRRLI
DFHPELYGIVFTRTKAEAQEISDRLMKMGYEAEALHGDLSQAQRDRVMERFRAKAIRILL
ATDVAARGIDVENISHVIHFGLPDDLESYTHRSGRTARAGRTGTSISIIHMHEMEKLRRL
EKILHIRFVRRSIPTGQQICEKQLYHYFEQLKQIDLSQIDIQIYLQTIQSSLDELRREEL
IERIAAYEFQHLLKHYAQARDLNVPLPEARPAYRAMNRKELSAVDHDTQGEWIRFRLNVG
RNHGLYKASLLQWLLDHTRLPKSAIGKLIILDTYSLIELDAKADLQSLQRLQGTRPTGLH
TDAPVDILLTRRLPRNQTRFAGQDR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacagaaaattcatttcaagcattaggaatcagtgaacccttactggctggagtt
cgcgatatgggttttgagcaccccaccccggtgcaacaacaggccattccccggctgatt
gcccaacaatccgataccattgtactcgcacaaaccggaacgggtaaaacagcagcattt
ggcttacctttacttcaacacattgatttatcccaacgccatattcaggcgttgattctt
agtcctacgcgtgaactggccttacagatcacacacgacctccgggaaatgggtaaatac
ctgaacggcctgcacatagctactgtatatggcggcagctccatacagcaacaaatccga
cagttgcgacagggcgttcagattgtggtggccacgcccggcaggctcatggacctcatg
cagcgacaggtcgttcaattgcaaagcgtgcgatgggttattctcgacgaagccgatgaa
atgctgaacatgggctttcgtgaagatatccatttcattttgcaacatgccacccatcgg
caatgctgctggcttttttccgcaacaatgccagcagaaatccgacaaatcatccgccag
tttatgcacgaacctgcggaaatcgttgtgggagcaaaaaatacagtagcatcgggcatt
agccatgaatattatgttacacacgcgcaacataaatttgaaaccctgcgcagacttatt
gattttcatccggaactctatggtatcgtatttacccgtaccaaggctgaagctcaggaa
atctccgatcgcctgatgaaaatgggctatgaagccgaggctttacacggagatctctca
caggctcagcgcgacagggtgatggaacggtttcgggcaaaggcaatccgcatcttgctg
gctactgatgtagctgcccgtggcatcgacgtggaaaatatcagccatgttattcatttt
ggactgccagatgatctggaatcctacacccatcgcagtggccgtacagcacgcgccgga
cgtaccggcacttccatttccattatccacatgcatgaaatggaaaaactcagacgactg
gaaaaaatattgcatatccgtttcgtgcgccgctccatacccaccggccaacaaatctgt
gaaaaacaattgtaccattattttgaacaactcaaacagatcgatctttcccaaatcgat
attcagatttatttgcaaaccattcagtcgtcactcgacgagctgaggagggaagaactg
attgaaagaattgccgcgtacgagtttcaacacctgcttaaacattatgcacaggccaga
gacttgaatgtacccttgcctgaagctcgccccgcttatcgtgcaatgaatagaaaagaa
ttgtctgctgtcgatcacgacacccagggtgaatggattcgttttcgcctcaacgtggga
agaaaccacggtctgtacaaagcttctctgcttcagtggttactcgatcacacgcgcctg
cccaaatcggccataggtaagctgattatcctggatacgtacagtttgattgaactggat
gcaaaggccgacctgcaatccctgcaacggctccagggcacccgcccaaccggtttacac
accgatgcacccgtcgatattttgttgaccaggcgtttgccacgcaaccaaacccgcttt
gcgggtcaggatcgataa
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