Thermaerobacter sp. PB12/4term: DYI95_000290
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Entry
DYI95_000290 CDS
T06418
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thep
Thermaerobacter sp. PB12/4term
Pathway
thep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DYI95_000290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thep03400
]
DYI95_000290 (mfd)
Enzymes [BR:
thep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYI95_000290 (mfd)
DNA repair and recombination proteins [BR:
thep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DYI95_000290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIA26173
UniProt:
A0A8T8D6F2
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All DBs
Position
56853..60443
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AA seq
1196 aa
AA seq
DB search
MTTLPAQDLTEDLLRLWQQLPEFPSLAGGVRQELPAQAVYGLGGPAAASLLAALAAATGR
TLFILTAEQGAADALAADLRAWVPAERVVVFPAIEVLPFEVLAASPELLALRLEALARLR
QGPCLVVAPVAAVARRLPHPERWAAGLVDLEPGQALDRDDLLARLVAAGYQRAEQVDRPG
ELAVRGGIVDVYPPAGEPVRIEFFGDEIDSLRRFDPGTQRSTGALERVRLVPARELVLDE
AAWRRGLAALASELDSLRDQTRHRRGGAARQLLDRLEQDLVRLEAERSIELAEHYLPFFE
PDMATLLDYAPGPAMAVWVEPRSLEEAVADRERQWQERQADLLARGEILPAQAALYLDEP
ALWGALASRPVLYLSVLARTPGQGPEPRQVYPVTARPAPMFHGQWDLFEEEVRTWQRQQY
RVLLVAGDGDRAGRLRQALLDADVAARQVERLTLPAPGEVLVAPAGLSEGFEVPALRWVV
LTEREVLGRRVARRRSPTVAADRAEAQALERLVDLKPGDYVVHVHHGIGRFLGLRTMEIQ
GVHRDYLTLQYAGGDRLYVPTDQIELVQKYVGAEGHQPRLARLGSGEWNKVKQRVKESVR
EMAGELLALYAARQSVRGHAFSPDTPWQRQFEDAFPYQETPDQLEAIAAIKADMERPVPM
DRLLVGDVGFGKTEVAMRAAFKAVQDGKQVAVLVPTTVLAYQHERTFKERFAPFPVTIRT
LSRFASPAEQAEILTGLAQGTVDIVIGTHRLVQPDVRFKDLGLVIIDEEHRFGVAHKERL
KQLKQNVDVLTLSATPIPRTLHMALAGIRDLSRIDTPPENRFPVQTFVVEWHESLVRDAI
QRELRRGGQVFYVHNRVQSIHAVRRRLERLLPEARFAVAHGQMAEGELERVMVDFMEGKA
DVLVCTTIIESGLDIPNVNTLIVEDADRMGLAQLYQLRGRVGRSDRVAYAYFTYRRDKVL
TEDAQKRLQAIKDFTELGAGFKLALRDLEIRGAGNLLGAEQHGFMLSVGFDLYTQLLEEA
VNELRGRQRPARLKPVIDLVVDAHIPDTYIRDARQKIEFYKKVNLAETPADLAEVREALQ
DRYGPPPEPVRNLLALAEVRQLAARCGVFRIEQQGTRIDMEAVAPQAGALTQACEALRPQ
LGRRLQLVRGRAAAFFRTDGLGEREVLTALRRFLRELARHTPLPAGEQPVDEPVAE
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccctgccagcccaggacctgacggaagacctgctgcgcctgtggcagcagctg
ccggagttcccctccctggccggaggggtgcgccaggaactgcccgcccaggcggtgtac
ggcctgggcgggccggccgcggccagcctgctggctgccctggcggccgccacgggccgg
accttgttcatccttaccgccgagcagggggcggccgacgccctggctgccgacctgcgc
gcctgggtgcctgcggagcgggtggtggtcttccccgccattgaagtcctgcccttcgag
gtgctggccgccagccccgagcttctggccctgcgtctggaggcgctcgcccggctgcgc
cagggcccctgcctggtggtggccccggtggccgccgttgcccgccgcctgccccatccg
gagcgctgggcggcggggctggtcgacctggaaccgggacaggccctggaccgggatgac
ctcctggcccgcctggtcgccgccgggtaccagcgggccgagcaggtcgaccgtcccggc
gagctggccgttcgcggcgggatcgtggacgtctacccaccggccggtgagcccgtacgc
atcgagttctttggcgacgagatcgactccctgcgccggttcgaccccggtacccagcgg
tcgacgggcgccctggagcgggtgcgcctggttcccgcccgggaactggtgctggacgag
gctgcctggcggcggggactcgctgccctggcctccgagctggactccctgcgggaccag
acgcgccaccgcaggggtggtgccgcccgccagctgctggaccggctggagcaggacctg
gttcggctggaggccgagcgctccatcgagctggcggagcactacctgcccttcttcgag
ccggatatggccaccctgctggactatgccccggggcccgccatggctgtctgggtggag
ccccggtccctggaggaggcggtggccgatcgggagcgccagtggcaggagcgccaggcc
gaccttctcgcccggggcgagatcctgcctgcccaggccgcgctctacctggacgaaccg
gccctctggggcgccctggcttcccggcccgtgctgtacctgtcggtgctggcccggacg
ccgggccaggggccggagccgcggcaggtgtatcccgtgacggcgcggcctgccccgatg
ttccacgggcagtgggacctgttcgaggaagaggtgcgcacctggcagcgccagcaatac
cgggtgctgctggtggccggcgacggcgaccgggccggccggttgcgccaggccctgctc
gacgccgacgtggcggctcgccaggtggagcgcctgaccctgcccgcccccggggaagtg
ctggtggctccggccggcctgagcgaaggctttgaggtgcccgccctgcgctgggtcgtc
ctgacggagcgggaggtattgggccgccgggtggcccggcggcgcagccccaccgtggcc
gccgaccgggcagaagcccaggccctggaacggctggtggacctcaagcccggcgattac
gtggtccacgtccaccacggcatcggccggttcctcggcctgcgcaccatggagatccag
ggcgtgcaccgcgactacctgaccctgcagtacgccggcggcgaccggctctacgtgccc
accgaccagatcgagctggtgcagaagtacgtgggcgccgagggtcaccagccgcggctg
gcccggctgggttccggcgagtggaacaaggtcaagcagcgcgtcaaggaatcggtgcgg
gagatggccggggagctgctggccttgtacgccgcccgccagtcggtccgcggtcacgcc
ttcagccccgacaccccctggcagcgccagtttgaagacgcctttccctaccaggagacg
ccggaccagctggaggccatcgccgccatcaaggccgacatggagcggccggtccctatg
gaccggttgctggtgggcgacgtgggcttcggcaagaccgaggtggccatgcgggcggcc
ttcaaagcggtccaggacggcaagcaggtggcggtgctggtgcccaccaccgtgctggcg
taccagcacgagcggacgttcaaggagcgcttcgcgccctttcccgtcaccatccgcacc
ctgagccgctttgcctcgccggctgagcaggcggagatcctgacgggcctggcccagggc
acggtggacatcgtcatcggcacccaccggctggtccagcccgacgtgcgcttcaaggac
ctgggtctcgtgatcatcgacgaggaacaccgcttcggcgtggctcacaaggagcggctc
aagcagctgaagcagaacgtggacgtgctgaccctgtcggccacgcccatcccccgcacc
ctgcacatggccctggcgggaatccgggacctgagccgcatcgacacgccaccggagaac
cgcttcccggtccagacctttgtggtggagtggcacgagtcgctggtgcgggacgccatc
cagcgggagctgcgccgcggtggacaggtgttctacgtgcacaaccgcgtccagagcatc
cacgccgtccggcggcggctggagcgcctgttgcccgaggcccgcttcgccgtggcccat
ggccagatggccgagggcgagctggaacgggtcatggtcgacttcatggagggcaaggcc
gatgtgctggtgtgcaccaccatcatcgagtcgggcctggacatccccaacgtcaacacc
ctgatcgtggaggacgccgaccggatgggcctggcccagctctaccagctgcgcggccgg
gtggggcgatccgaccgggtggcctacgcctacttcacctaccgccgcgacaaggtgctg
acggaagacgcccagaagcgcctgcaggcgatcaaggacttcaccgagctgggggcgggg
ttcaagctggccctgcgggacctggagatccgcggcgccggcaacctgctgggcgccgag
cagcacggcttcatgctgtcggtgggcttcgacctgtacacccagctgctggaagaggcc
gtcaacgagctgcgcggccggcagcggcccgcgcggctgaaaccggtgatcgacctggtg
gtcgacgcccacatccccgacacctacatccgcgacgcccgccagaagatcgagttctac
aagaaggtcaacctggcggagacgccggccgacctggccgaggtgcgggaggcgctgcag
gaccgctacggcccgccgccggaaccggtacggaacctgctggccctggccgaggtgcgg
cagctggcggcccgctgcggcgtcttccgcatcgaacagcagggcacccggatcgacatg
gaagccgtcgctccccaggccggggccctgacccaggcgtgcgaggcgctgcgcccgcag
ctgggccggcggctgcagctggtgcggggccgggcggcggcgttcttccgcaccgacggc
ctgggcgagcgcgaggtcctcaccgccctgcgccgctttctgcgcgagctggcccgccac
acaccccttcccgccggagagcagccggtggacgagccggtggcagaataa
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