Thermaerobacter sp. PB12/4term: DYI95_003900
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Entry
DYI95_003900 CDS
T06418
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
thep
Thermaerobacter sp. PB12/4term
Brite
KEGG Orthology (KO) [BR:
thep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thep03400
]
DYI95_003900
Enzymes [BR:
thep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYI95_003900
DNA repair and recombination proteins [BR:
thep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DYI95_003900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_16
AAA_12
ResIII
WXG100
Motif
Other DBs
NCBI-ProteinID:
QIA26778
LinkDB
All DBs
Position
957935..962401
Genome browser
AA seq
1488 aa
AA seq
DB search
MTAATGQAASRRRWTDAQLQAISLRGRNLLVSAAAGSGKTSVLVERITRRLLDPADPVEI
DRLLVVTFTEAAAAEMKERIRNRLEQALAEHPDDARLRRQLALLGRASISTVHSFCLRIT
RQYFYRLGLDPATRVAGEHEAQLLRFAVLDEVFERRYAQAAPDFLALVEAYGGDRGDESL
RKLVLDLYDSAYARPWPEAWLDGLARMYRDSAAALEQSTWFAVARQGLVRAFQRHARRLA
GLAAQCRQPGGPEVWAETLEDDARRLEALARELEGVGWEAAGRLVAQAAGDWPRLPRNPQ
SQDPMHARIQKGRNQVKDQVRDLAQGMWSRAPAEVAADLARLQPYVQTLVDLCRDFARSL
QAAKRDQGLMDFADMEHYALQVLADPEAPAGVLRPSPVARELRRFFQEVLVDEYQDINPL
QDAILQLVAGDGEEVPFNLFMVGDVKQSIYAFRQAEPGIFLARYRAYPPAPGPGDAAGGG
ASGAGAAPARGPETAHGTAGVEPPGAGDPEAAAGRGWRIDLNANFRSRPAVLAAVNDLFR
RIMVPDLGGLAYDEEARLNPGAPYPDLPPGASGGEAPVEVYLLERKPEALDEDWPDRLEG
GAGFDPAGSLPAGTAGARTGGAGTRKAEPEETPAEPPAGDEDDGLSGEEAADLTALEQEA
RLVAWRIRELVEGTGRQPPLVIWDPDQNAYRPVRYRDVVVLLRSARLRASTFVEVLDREG
VPVYSRSRTGYLVAPEVEVMLALLQVLDNPRQDIALAAVLRSPVVGLDARDLARIRLAGP
GLSFYEAACRVAGWDPEAEAPVGAAGQDLEGLSQSQDAARAAHGRSAAGVDAGTSTTGRG
AGGDGEAAQDPLAARLRRFLADLSRWRSAARRYPLSRVIQQLYDETGILAYVSGLPAGEQ
RRANLEALRDRARQFDQFARQGLFRFLRFIDRLRERGDDLGTAPALGENDDVVRVMTIHQ
SKGLEFPVVVVADLGVEFQFDRGHALIHRDLGLGLKVADPDLRIRYPSLAYEAVRTQQRL
DTLAEELRILYVALTRARERLILVGSAQDLPASAARWWAAAGGALAGGDRPLPAEAVAGA
TRYLDWLGPALIPHPDAAPLRQLAMAPSPLEPAAGSEGLAREGWTSRWRWTVWLRPPATP
GAAAGPSAVPGPQDPESTHAERPADGHRDEPVAPAPPGTGQGTGGLPAPSWLEPLVRGQP
LPAGAVDGPAVEALRRRLRWRYPYAPLANRFAKRSVSELKGQDDPEWQAYPLPADLRRGL
RQPRLHWNGTPPGAEPARPDEPATAAAVTGAARGTATHRVLQHLNLAGPLDRRSIERQIE
RLVARRLLAPAEAAAVDVAALARFFAGPLGRRLLHRPDRVYREWMFTLGVPAVEMYPDLV
PALEAAAQEAGVQEAGAEEAGRISGRPVPAGDLVVVQGIVDCFVDEEDGLLLLDFKTDEP
RQRSIEQLAAFYAGQVRFYRRALAEITGRPVKEAYLYFLATGDAVPVG
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggccaccggtcaggcggcttcccgccgccgctggacggatgcccagctgcaa
gccatctccctgcggggacggaacctcctggtcagcgcggcggcgggctccggcaagacg
tccgtcctggttgagcgcatcacccgccggttgcttgaccccgccgacccggtggagatc
gaccggttgctggtggtgactttcaccgaggcggccgccgcggagatgaaggagcggatc
cggaaccggctcgagcaagccctggccgaacatcccgacgacgcccggctgaggcggcaa
ctggccctgctggggcgcgccagcatctccaccgtccactccttctgcctccggatcacg
cggcagtacttctaccgcctgggtctggaccccgcaacccgggtggccggcgagcacgag
gcccagctgctgcgcttcgcggtcctcgacgaggtgttcgagcggcggtacgcccaggcc
gctccggatttcctggcgctggtcgaggcgtacggcggcgaccgcggtgacgagtccctg
cggaagctggtcctcgacctgtacgatagtgcctatgcccggccgtggcctgaggcgtgg
ctggacgggctggcccggatgtaccgggacagcgccgcagccctggagcagagcacctgg
tttgccgtggcccggcaggggctggttagggccttccagcgccatgcccgccgcctggcc
ggcctggccgcccagtgccggcagcccggcggcccggaagtgtgggccgaaaccctggag
gacgatgcccggcgcctggaggccctggcgcgggagctggagggggtcggctgggaggct
gccggccggctggtggcccaggcggccggggactggccgcgcttgccccgcaacccccaa
tcccaggatccgatgcatgctcgcatccagaagggacgcaaccaggtcaaggaccaggtc
cgggatctggcccagggaatgtggagccgggctccggcggaggtggccgccgacctggcg
cggctccagccctacgtccagaccctggtggacctgtgccgggattttgcccggtccctg
caggccgccaagcgcgaccagggtctcatggacttcgccgacatggagcactacgccctg
caggtcctggcggatccggaggcgcccgccggcgtcctccgcccgtcgcccgtggcccgg
gagctgcgccggttcttccaggaggtcctggtggacgagtaccaggacatcaacccgctg
caggacgccatcctccagctggtggccggtgatggcgaggaggttcccttcaacctcttc
atggtgggggatgtcaagcagagcatttacgcatttcgccaggccgagccgggcatcttc
ctggcccgctaccgggcgtacccgccggcgccggggccgggcgatgccgccggaggcggt
gccagcggagccggggctgccccggctcgcggtccggaaaccgcccatgggacggccggg
gtggaaccgcctggcgccggggacccggaagcggccgcgggccgtggctggcgcatcgac
ctcaacgccaatttccgcagccggccggcggtcctggcggcggtcaacgacctcttccgc
cgcatcatggtgccggatctgggcggcctggcctacgacgaggaagcccggctcaacccc
ggtgccccgtacccggacctgcctccgggggcctccggcggggaggcgcccgttgaggtc
taccttctcgagcggaagcccgaggccctggatgaggactggccggaccgcctcgaggga
ggggccggtttcgaccctgccgggtccctgccggccggcaccgccggcgccaggaccggc
ggcgccgggacccgcaaggccgaaccggaggaaaccccggccgagccgccggccggggac
gaggatgacggcctgagcggcgaggaagcggcggacctgacggccctggaacaggaagcc
cggctggtggcgtggcggattcgggagctggtcgaaggcaccggccggcagccgccgctg
gtcatctgggatcccgatcagaatgcctatcgcccggtccggtatcgggacgtggtggtc
ctgttgcgcagtgcccgcctgcgggcctcgactttcgtcgaggtgctggaccgggagggt
gtacccgtctattcccgctcacgcacgggttacctggtggctcccgaggtcgaagtcatg
ctggccctgctgcaggtgctggacaacccgcggcaggacattgccctggcggccgttctc
cgctcgccggtggtgggacttgacgcccgtgatctggcccgcatccgcctggctggaccc
ggcctgtccttttatgaagcagcttgccgggtggccggatgggatcccgaagccgaggct
ccggtgggcgcggcggggcaggacctggagggcctctcccagtcgcaggacgccgcccgt
gcagcccacggccgcagtgccgctggggtcgacgccggtacaagcaccacgggccggggg
gcgggcggggatggggaagcggctcaggacccgctggccgcccgcctgcggcggttcctg
gccgacctttcccgatggcggtcggctgcccggcgatacccgctctcccgggtcatccag
cagctgtacgacgagacgggcatcctggcctacgtgtcgggcctgcccgcaggggagcag
cggcgggccaacctggaggcgctgcgggatcgggctcgccagttcgaccagtttgcgcgg
cagggcctcttccgcttcctgcggttcatcgaccggctgcgggaacggggggacgacctg
ggtaccgcaccggccctgggcgaaaacgacgacgtggtccgcgtcatgaccatccaccag
agcaaggggctggagttcccggtagtcgtcgtggcggacctgggggtcgaattccagttc
gaccgcggccacgccctgatccaccgggacctggggctcggcctgaaagtggccgaccca
gacctgcgcatccgctaccccagcctggcctatgaggcggtgcggacccagcagcggctg
gataccctggcggaagaactccgcatcctctatgtcgccctgacccgggcccgggagcgg
ctcatcctggtggggtccgcccaggacctgcccgcgtcggccgcccggtggtgggccgct
gcgggcggtgcactggccggtggcgaccggcccctgccggcggaggcggtcgcaggagcc
acccgctacctggactggctgggtccggccctgatcccgcaccccgatgccgcgccgctg
cgacagctggccatggcccccagcccgctcgagccggctgcgggtagcgaggggctggcc
agggaggggtggacctcgcgctggcgctggaccgtctggctgcgtccgccggcgacgccc
ggtgcagcggcgggcccctcggcggttcccggcccccaggatccggagtcgactcacgcg
gagagaccggcggacgggcaccgggacgaaccggtggcgccggcgccaccgggtaccggg
caggggaccggtggcctcccggcccccagctggctggaaccgctggtccgcgggcagccc
ctgcccgccggcgccgtcgacggcccagcggtcgaggccctgcgccggcggttgcgctgg
cggtatccatacgcgcctctggccaaccggttcgccaagcgctcggtcagcgagctgaag
gggcaggacgatccggagtggcaggcatatccgctccctgccgacctgcggcggggcctg
cgccagccccgcctccattggaatggaacgcccccgggggcggagcccgcccggccggac
gaaccggcgacggctgccgcggtgacgggggccgcccggggcaccgccacccaccgggtc
ctgcagcacctcaacctggccggcccgctggaccggcggtccatcgaacggcaaatcgag
agactggtcgcccgccggctgctggcgccggcggaagccgctgccgtcgacgtcgcggcc
ctggcgcggttctttgccggcccgctgggccggcgccttctacaccgtccggaccgtgtc
taccgcgagtggatgttcaccctgggcgtgccggcggtggagatgtacccggatctggtg
ccggcactggaggcggccgcgcaggaggccggtgtgcaggaggcgggtgcagaggaggcc
ggcaggatttccgggaggccggtccctgcgggcgacctggtggtggtccagggcattgtg
gactgctttgtcgacgaggaggacggcctgctcctgctggacttcaagaccgacgagcca
cggcaacggtccatcgaacagctggcggccttctatgccggtcaggtgcgcttctaccgg
cgggcgctggcggagatcacgggccgtcccgtcaaggaggcttacctttacttcctggcc
acgggggatgccgtgcccgtcgggtga
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