Thermaerobacter sp. PB12/4term: DYI95_010605
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Entry
DYI95_010605 CDS
T06418
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
thep
Thermaerobacter sp. PB12/4term
Pathway
thep02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thep00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DYI95_010605 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thep03021
]
DYI95_010605 (rpoD)
Transcription machinery [BR:
thep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DYI95_010605 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Glyoxalase
Motif
Other DBs
NCBI-ProteinID:
QIA27899
LinkDB
All DBs
Position
complement(2537453..2538751)
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AA seq
432 aa
AA seq
DB search
MDVSEVKSPLLEIDEVKRLVDRGRQRGGVLTEDEVTDALQAVDLDADQVDEVYQLLEDLG
IEVETGPRRSRNGARNGRAARGHRTRSGGAGLDGMMDEAALDGVSGLDRPEDLDADTAGG
GEAGDEGDQDAAAEGTGVDQLGEPVDDEDDLSMPDGVALDDPVRMYLKEIGRIPLLTPEQ
EIELAKRIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFD
YRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTP
EEIAKEMGIEPEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLL
REQLEDVLHTLTDREQKVLRLRFGLDDGRQRTLEEVGQIFGVTRERIRQIEAKALRKLRH
PSRSKKLKDYLE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgagcgaggtcaagagcccgttgctggagatcgatgaagtcaagcgcctggtc
gaccggggacgccagcggggtggcgtgctgacggaggatgaggtcaccgacgccttgcag
gctgtcgacctggatgcggatcaggtggacgaggtctaccagctcctagaggacctgggc
atcgaggtggagacgggtccccgccggtcgcggaacggcgcccgcaacgggcgggcggcg
cgcggtcaccgtacccgctccggcggtgccggcctggacggcatgatggatgaagctgcc
ctagacggggtctcggggctggatcgacctgaagacctggacgcagacacggccggcggt
ggcgaggccggagacgagggtgaccaggacgcggccgccgaagggaccggcgtcgaccag
ctgggcgagcccgtcgatgacgaggacgatttgtccatgccggacggcgtcgccctcgac
gacccggtgcgcatgtatctcaaggagatcgggcgtatccccctcttgacgccggaacag
gagatcgagctggccaagcggatcgagcagggcgacgaagaggccaagcgtaagctgatc
caggccaacctgcggctggtggtcagcatcgccaagcgctacgtggggcgcggcatgctg
ttcctggacctgattcaggagggcaacctgggcctgatcaaggcggcggagaagtttgat
tatcggaagggcttcaagttcagcacttatgccacctggtggatccgccaggccatcacc
cgggccatcgccgatcaggccaggacgatccgcatccccgtgcacatggtggagaccatc
aacaagctcatccgcgtccagcgccagctggtccaggagctcgggcgggagcccacgccg
gaggagatcgccaaggagatgggcatcgagcccgagaaggtccgggagatcatgaagatc
gcccaggagcccgtgtccctcgaaacgcccatcggcgaggaagaggacagccacctgggt
gacttcatcgaggacgaggatgccctggcgcccgccgaggcggcgtcccagcttttgctg
cgggagcagctggaggatgtgcttcacaccctgacggaccgcgagcagaaggtcctgcgg
ctgcgtttcggcctggacgacgggcgccagcggacgctggaggaagtgggccagatcttc
ggcgtcacccgggagcggatccgccagatcgaggccaaggcgctgcggaagctgcggcat
ccgtcccgcagcaagaagctgaaggactacctggagtaa
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