Thermosipho sp. 1070: Y592_05195
Help
Entry
Y592_05195 CDS
T04909
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ther
Thermosipho sp. 1070
Brite
KEGG Orthology (KO) [BR:
ther00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ther03016
]
Y592_05195
Enzymes [BR:
ther01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Y592_05195
Transfer RNA biogenesis [BR:
ther03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Y592_05195
Prokaryotic type
tRNA splicing ligases
Y592_05195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF1685
Motif
Other DBs
NCBI-ProteinID:
ANQ53812
LinkDB
All DBs
Position
complement(1031390..1032721)
Genome browser
AA seq
443 aa
AA seq
DB search
MYRIKKSGKMKVDAFVLTDSLNDISEAIEQLKNVASLPSIVKAAYAMPDIHWGYGFPIGG
VAAFSEIISPGGVGFDINCGVRLLKSEVTYKEISKHIQKVLEKIYKLVPVGLGSTSKKFE
KKLFKKIIENGTKAVIELGFGYEEDLNFIENNGTLLPANMLDVSDTAYKRGKEELGTLGA
GNHFIEIQKVEEIYDKKIANVLGLFEGQITVMIHTGSRGFGHQVATDYIKLMRNLNIDLP
DKQLVYAQFKSEIGQKYYSAMNCAANFAFSNRQIITHLVRKAFSDISKLYLVYDVVHNIA
KVEIHDGQKVIVHRKGATRALGPGQKELPEKYKDIGQPVIIPGDMGTSSYILVGTNENFA
FSSTAHGAGRILGRRQALKKLKLNDILSNLERKGIILKSKSKRTIIEEAPNAYKDIDKVV
EIVDKLRLSKKVAKLVPLGVIKG
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtataggataaaaaagagcggaaagatgaaagtcgatgcctttgtgcttacagatagt
ttaaatgacatatctgaagctattgaacaactcaaaaatgttgcatctttaccaagtata
gtgaaagctgcatatgcaatgcccgacatacattggggatatggatttccaattggtggt
gttgcggcattttcagaaattataagccccggaggtgtggggtttgatataaattgtggc
gttagactattaaaaagtgaagttacatacaaggaaatttcaaaacacatacaaaaagtt
ttagaaaagatatacaaattagtacccgtaggacttggttcaacttcaaaaaaatttgaa
aaaaaactctttaaaaaaataatagaaaatggcacaaaagcagttatcgaactaggtttt
ggttatgaagaagacttaaattttatagaaaacaacggcacattattacccgcaaatatg
ttagacgtatcagacactgcctacaaaagaggcaaagaagagttaggtactttaggcgct
ggaaatcattttatcgaaattcaaaaagtagaagaaatatacgataaaaaaatagcaaat
gtattaggactttttgaaggacaaatcactgtaatgatccatacgggaagtaggggattt
ggtcatcaagttgcaacggattacattaaactaatgagaaatttaaatatcgatcttcca
gataaacaacttgtctatgctcaatttaaaagtgaaattggtcaaaagtattattctgca
atgaactgtgccgcaaattttgcattctcaaacagacaaataatcacacatcttgttcga
aaggctttttctgatatttcaaaactatatctggtatatgatgtagtacacaatatagca
aaagttgaaattcacgatggtcaaaaagttatagtccatagaaagggagcaactagggct
cttggccctggtcaaaaagaactacctgaaaaatacaaagacataggtcaaccagttata
atccctggtgatatgggaacctcctcgtatatcttagtaggaacaaacgaaaactttgca
ttttcttctactgcacatggagcaggaagaattcttggcagaagacaagccttaaaaaaa
ttaaaactaaacgatatactttcaaatcttgaaagaaagggtataatattaaaaagtaaa
tccaaaagaactataatagaagaagcaccaaatgcttacaaagatatagataaagtagtg
gaaatagtggacaaattaagactttccaaaaaagtagccaaattagtacctttgggggtt
ataaaaggttga
DBGET
integrated database retrieval system
