Thermosipho sp. 1070: Y592_06105
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Entry
Y592_06105 CDS
T04909
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ther
Thermosipho sp. 1070
Pathway
ther03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ther00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Y592_06105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ther03021
]
Y592_06105
03400 DNA repair and recombination proteins [BR:
ther03400
]
Y592_06105
Enzymes [BR:
ther01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Y592_06105
Transcription machinery [BR:
ther03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Y592_06105
DNA repair and recombination proteins [BR:
ther03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Y592_06105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ANQ53976
LinkDB
All DBs
Position
complement(1197272..1200790)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKEIKSGKRTRYSFGRVQAPIPVPNLVEIQTKSYQDFLENGILKVLKKFSPITSSKSDLR
KEKGFSLEFISVRIGEPQNTVQECKERLLTYTVPVYTTVRITDNSTNEMIEEEAFLGYIP
YMTPRTTFIINGAERVVVNQLVRSPGIYFVEEAKKTSGTRPIYVAHFLPVRGAWLEILLN
LNDEVFYARIDRKRRINLFLLLKALGYGDDLELLSLFPHWIDVEDEYTLLHSEGLVILED
VKMKNGEILAKRGDVITQGLIEKLSNSNIEKIKVAHRYAVNTLEKLKHMYGENVEENRAY
IEIFRKLRPGELPRINAAKIFLKNLYFNEERFELSEVGRFKMNNRLEEAYRKYLIDVEGK
KPEEVENTKYTETSNVLTPMDIVLASRNLIEIDKHPGTMDTKDHLGNKRVRTVGELIRIE
FERAFSKAVFMIQEKLATYTSLDKISVQSLINVKSIIATINSFFATNPLSQFMDQTNPLA
ELTHKRRLTAVGPGGLKRERARFEVRDVHHSHYGRMCPIETPEGANIGLITSLSVYSSID
KYGFLITPYVKVVKGKVTNEVVYLTADEEENYKIAPSTTPVDENGNIIPENVTVRYEEKV
LYVNKNNVQFLDVAPNQIVSVSTSLIPFLEHDDANRALMGSNMQRQGVPLIETEAPRVGT
GMEWNAAKYSGTLILAKHDGIVKKVDARKIIIHRIDKNGKEMYDSMGNPILDIYELMKFT
RTNQDTCINQRPIVNVGEFVKKDEPIADGPATDMGELALGKNVLVAFVPWEGYNFEDAIL
ISEELLEKETYTSIHIEVYETTARDTRLGPEEITPDIPNVSKEKLRNLDEDGIVRIGAYV
QETDILVGKVTPKSESDTTPEEKIIRSVFGEKGKEVKDTSLRVPHGIEGRVIAVHVFDKE
KDGDLGPGVNKLIRVYVAIRKPLEVGDKLAGRHGNKGVVSKILPKEDMPFLPDGTPVQVV
LSPLGVPSRMNVGQILETSLGWLAVLTNRWFATPVFDGAKEKDILPELYKARKKMGLEAG
DNEKNPSGKVILRDGRTGKEFDHPILVGYMYVMKLIHIARDKIHARSTGPYSLIHQQPLG
GKAQFGGQRFGEMEVWALEAYGAAHTLNEMLTVKSDDIRGRNEVYKAIMKGNNIPEPGLP
ESFKVLIRELRGIALDVRVYDEEGNEIDIEKL
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaattaaaagtggaaaaaggacccgctattcatttggtagggtccaagcacct
atcccagttcccaacctcgtggaaatacagacaaaatcttaccaagatttcctcgagaat
gggatacttaaggttctcaaaaaattctcacccataacttcatcaaaatccgatctaaga
aaagaaaagggattctccctggaatttatctctgtaagaatcggagaacctcaaaacact
gttcaagaatgtaaagaacgactattaacttatactgttccggtttatacaacagttcgt
ataactgataacagtactaacgaaatgattgaagaagaagcatttcttggctatattcct
tacatgactccaagaactaccttcataatcaacggagcagagagggtagttgtaaatcaa
ttagtaagaagccctggaatttattttgtggaagaagccaaaaaaacttctgggacaaga
cctatatacgttgcccactttttaccagtaagaggtgcttggcttgaaatattactcaat
ttaaacgatgaggtattctacgcaagaattgatagaaaaagaaggataaatttattttta
ctcctaaaagcacttggatatggagatgacttggaattactatcgttgttcccacattgg
atcgatgttgaagacgaatatactttattacattcagaaggacttgtaatacttgaagat
gttaaaatgaaaaacggcgaaatattggcaaaacgtggagatgttattacacaaggactt
attgaaaaactctccaattcaaatatcgaaaagattaaagttgctcacagatatgcggta
aatactttagaaaaattaaaacatatgtatggagaaaatgtagaagaaaatagagcatat
atagaaatcttcagaaaattaagacctggtgaacttccaagaataaatgccgcaaaaata
ttcttaaaaaacctttatttcaacgaagaaaggtttgaactttcagaagtcggaagattc
aaaatgaataacagactcgaagaagcttatagaaaatacttgatagatgtcgaaggaaaa
aaacccgaagaagttgaaaatactaagtatacagaaacttcaaacgttttaactccaatg
gacatcgtgcttgcatcaagaaatttaatagaaatagacaaacaccctggaactatggat
acaaaagatcatctaggaaacaaaagagtaagaaccgttggtgaacttataagaatcgaa
tttgaaagggcattttcaaaagctgttttcatgattcaagaaaaacttgcaacatataca
tcacttgataaaatttcagtacaaagcttaattaacgttaaatcaattattgcaacgata
aattcattttttgcaacaaatccactttcacaatttatggatcaaactaatccacttgca
gaattaacacacaaaagaaggttaactgccgttggacctggaggtttaaaaagagaacgc
gcaagattcgaagtacgtgacgtccaccattcccattatggaagaatgtgtcctattgaa
acacctgaaggtgcaaacataggtcttattacctctttatcagtctactcttcaatagat
aaatacggatttttgataacaccttacgttaaagtagtaaaaggtaaagttactaatgag
gtagtctatttaacagcagatgaagaagaaaattacaaaatagcaccttcaacaactcct
gttgatgaaaatggaaatatcattccagaaaatgttactgtaagatacgaagaaaaagta
ctttacgtgaataaaaacaacgtacaatttttagatgttgctcctaaccagatcgttagt
gtttccacttctttaattccattcctagaacacgacgacgcgaacagagcgctaatgggg
tctaatatgcaaagacaaggtgttccattgattgaaactgaagcacctagagtaggtaca
ggaatggaatggaacgctgcaaagtattctggtactcttatccttgcaaaacacgatgga
atagttaaaaaagtagatgcaagaaagataattatacacagaatagataaaaatggaaaa
gaaatgtacgattctatgggaaatccaattcttgatatatacgaactcatgaaattcaca
agaacgaaccaagatacttgtattaatcaaagacctatagttaatgttggagagtttgtc
aaaaaagacgaaccaatagcagatggtcctgcaacagatatgggagagttagcccttgga
aaaaacgtacttgtggcttttgtaccttgggaaggttacaactttgaagatgctatttta
ataagtgaagaacttttagaaaaagaaacgtatacttccatacatattgaagtgtatgaa
acaacagcaagagatacaagacttggtcctgaagaaataacacctgatattcccaatgtt
agtaaggaaaaactaagaaatttggatgaagatggtattgtcagaataggcgcatacgta
caggaaacagatattttagttggtaaagtaacaccaaaaagtgaaagtgatacaacccca
gaagaaaaaataataagatcagtttttggagaaaaaggtaaagaagtaaaagatacttcg
ttaagggttccacatggaatagaaggaagggtaattgctgttcacgtttttgataaggaa
aaagatggagatttaggcccaggtgttaacaaattaataagggtatatgttgcaatcagg
aaaccccttgaagtcggtgataaattagcaggaagacatggtaacaaaggtgtcgtttca
aagatattgccaaaagaggatatgccattcttaccagatggtacacctgtacaagtagta
ttaagtcctcttggtgttccatcacgtatgaatgttggacaaatactagaaacaagtctt
ggatggttagcagttctaacaaatagatggtttgcaactcccgtatttgatggtgcaaaa
gaaaaagatatcttacctgagctatataaagcaagaaaaaaaatgggacttgaagcaggt
gataatgaaaaaaatccgtctggaaaagtaattttgcgcgatggtagaactggaaaagaa
tttgatcatcctatcttggtaggttacatgtatgtaatgaagctcattcacatagcaagg
gataaaatacatgcaagatccacaggtccatactcacttattcaccaacaaccacttggc
ggtaaggcacaatttggcggtcaaagatttggtgaaatggaagtgtgggcattagaagca
tatggtgctgcacacactctaaacgagatgttaacggtaaaaagtgacgatatcagggga
agaaatgaagtatacaaagcaataatgaaagggaacaatataccagaacctggtcttcct
gaaagtttcaaagtgcttataagagaactaaggggaatcgctctagatgttagagtatac
gatgaagaaggtaatgagatagatattgaaaagttataa
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