Thermosipho sp. 1070: Y592_08870
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Entry
Y592_08870 CDS
T04909
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ther
Thermosipho sp. 1070
Pathway
ther03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ther00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y592_08870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ther03019
]
Y592_08870
03016 Transfer RNA biogenesis [BR:
ther03016
]
Y592_08870
Enzymes [BR:
ther01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Y592_08870
Messenger RNA biogenesis [BR:
ther03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Y592_08870
Transfer RNA biogenesis [BR:
ther03016
]
Prokaryotic type
tRNA degradation factors
Y592_08870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
FAS_AT_central
Motif
Other DBs
NCBI-ProteinID:
ANQ54477
LinkDB
All DBs
Position
1703426..1705522
Genome browser
AA seq
698 aa
AA seq
DB search
MKDFKEWSKELFGRKLTVQYGKVAKQSSGSAWVQFGDSVVLATANISDRVIEGVDFVPLT
VEYQEKFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKYLRNDVQLIVTVLSV
DSDTPPDVTGIIASSLALNFSKIPFTGIVAGVRVGYVDGKFIVFPTEEQLKNSRLDIVVA
GSKDAITMVEGEAKEISEEEMVQALLVAHDAIKEIISFEEEILKDISVKKMEIEEPKPKE
ELIQKLESLILEQELKERLLTKEKLERSERLKEYKEEVISKIFEEFDVDEEEKATQEMLL
KEYFDEKAKSLMRKIIVTEGLRADGRSPEDIRPIICEVGILPRTHGSALFTRGETQSLGI
VTLGAPMEEQIVDTIMEEGTKRFILHYNFPPFSVGEVKPLRGPGRREIGHGHLAERALKA
VAPAEDDFPYVIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKTHVAGVAMGLIVEDG
EAVVLTDIQGLEDHWGDMDFKVTGTKDGITAFQMDCKIAGVGEELLKKALEQARIARMKI
LDIMFKTIEKPRESLSPYAPLIANIEIDPIKVGEIIGPGGKVIKSIVKEFGVEISIDDTT
GKVSIYGKDQKKVNEAIEYIKTLTREIKVGDIFEGKVTRIEPYGLFVELMPGKIGLAHSS
KLGSDSKEFRKKYKIGDQIKVVVVNIDNSGRIQLGKAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattttaaagaatggagtaaggagttatttggaagaaaattaacagttcaatat
ggaaaagttgctaaacaatcttcaggttcagcatgggttcaatttggagatagtgtggta
ttagctactgcaaatatttcagatagagtgatagaaggagttgattttgtcccgttaacc
gttgaatatcaagaaaaattttacgccgccggaaaaattccaggtgggtttataaaacgg
gagggtaaaccttctgaatctgcaattttatcagcaagattgattgatcgaccaataagg
ccgttgtttccaaaatatctgagaaatgatgtgcagttaattgtaactgtactatctgta
gattctgatacaccaccggatgttactggtataattgcatcttcgctagctttgaatttt
tcaaagataccgttcactggtattgttgccggtgtaagagtgggatatgttgatgggaag
tttattgtttttccgaccgaagaacaattaaaaaatagtaggttagatattgtagttgcg
ggaagtaaagatgcgataacaatggtggagggagaagcaaaggagatttcagaggaagaa
atggtgcaagcattgcttgttgcacatgatgcaattaaagagataatatcttttgaagag
gaaattttgaaagatattagcgttaaaaagatggaaatagaagagccaaaaccaaaagaa
gaactaattcaaaagttggaaagtttaattttagagcaagaattaaaggaaagattatta
accaaagaaaaattggaaagatccgaaagattaaaagagtataaggaagaggttatttca
aaaatttttgaagaatttgatgttgatgaagaggaaaaagcaactcaagaaatgctttta
aaagaatattttgatgagaaagcaaaaagtttgatgaggaaaataatagttacggaagga
ttaagagctgatggaagaagcccagaagatattaggccaattatttgtgaagtggggatt
ttgccaaggactcatggttcggcactctttacaaggggagaaactcaaagtttgggaata
gtaacacttggtgctccaatggaagaacaaattgttgatactataatggaagaaggaaca
aaacgttttattttgcattataattttccaccattttccgttggagaagtaaaaccgtta
agaggccctggaagaagagaaataggtcatggccatttagcggaaagggcactaaaagct
gtggcaccggctgaagatgattttccatatgtaatacgtgtagtttctgaaattttggaa
tcaaatggttcttcttcaatggcaactgtatgttctggttctttggcgctcatggatgct
ggagttccgataaaaacacatgttgcaggggttgcaatggggttaatcgtagaggatgga
gaagcagttgttttaactgatattcaaggtttagaagatcattggggagatatggatttt
aaagttacgggtacaaaagatggtattactgcgtttcagatggattgtaaaatagcagga
gtgggcgaggagttacttaaaaaagctttagaacaggcaagaatagctagaatgaagatt
ttggatataatgtttaaaactattgaaaaaccaagagaatccctatcaccttatgctcct
ttaattgctaatatagagatagatccgataaaggttggagaaataataggtcctggcggt
aaagtaattaaatctattgttaaagaatttggcgttgaaatatccattgatgatacaact
ggaaaagtttcaatttatggtaaggatcaaaagaaagttaatgaagccattgaatatata
aaaacattaactagagaaataaaagtgggtgatatttttgaaggtaaggttactagaatt
gaaccttatggtttgtttgttgagttaatgcctggaaaaataggacttgcacattctagt
aaattaggaagtgattcaaaggaatttagaaaaaaatacaagataggagatcaaataaaa
gtagtagttgttaatatagacaatagtggaagaattcaattgggaaaagcagaatag
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