Thermomonas aquatica: FHQ07_00500
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Entry
FHQ07_00500 CDS
T06025
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thes
Thermomonas aquatica
Pathway
thes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FHQ07_00500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thes03019
]
FHQ07_00500
03009 Ribosome biogenesis [BR:
thes03009
]
FHQ07_00500
Enzymes [BR:
thes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FHQ07_00500
Messenger RNA biogenesis [BR:
thes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FHQ07_00500
Ribosome biogenesis [BR:
thes03009
]
Prokaryotic type
rRNA processing factors
FHQ07_00500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDA55904
UniProt:
A0A5B7ZL09
LinkDB
All DBs
Position
complement(98438..101371)
Genome browser
AA seq
977 aa
AA seq
DB search
MKRMLINATQAEELRVAIVEGQTLYDVDIEQPSKDNKKSNIYKGRITRLEPSLEAAFVEY
GAERHGFLPLKEISRDYFQAGVDPNKAGLKELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGDDRAELKKAMDALNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLSIWRAIAEAALTKPAPFLIYQESRLIVRALRDYMRSDIGEILVDTPEMYAEAL
DFVEQVMPHNKRKLKHYTDDTPLFNRFQIESQIEGAYERTVRLPSGGALVIDQTEALTAI
DVNSARATKGGDIEETAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQRDVENK
LQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGEASQIVCPTCEGHGRMRSIESLSLS
IIRVAEEHAMKDNTGQVLVQAPVEIANYLLNEKRNALREIEQRHDAPIVIVADEQLHTPH
YEVTRIRENELGEETARPSYQRGTPRKLATIALTKAQLNIPPAPMVTNVKPAQPAPLREP
KPMPVEAEPRPVAAAVPVVVAPASSGFIGWLKSMFNGAPAPEPQPVKAEAQGGRREERGN
RRDRDGRGNRDNRRDDNRRNAQNDNRGGNKPQGDAPKQQQAQKQNQQKPQQQQQPKQDKP
QKQQQQNQQKPLQQQQPKQDKPQAPKPAPAETAAASIAAVVAEDATAKVAAPLEQAVDAA
AIAIPAQAVAAENASESGDDAAGEGGSKRRRGRRGGRRRRRGAGEAAGAADEAMLDQDGP
LDEALAADGSQPEFDFDDIEAPTPVAVERAPAPVAEVARVVAAAQPEVIAPAPAAIEAPV
VEAIATPAEAAPAATPAVASAPETAVVTEAAAPAVIERVAETVAPAEVPVEPAAAIAQAD
AAEEVVAAEEVAATAEVAQAATAVEAETVSPSPSPADEALSRAEQLRGLFDTARNDAGTP
PAPTQDDAAAVEANRNA
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctcatcaatgccacgcaggcggaagaactgcgcgtggcgatcgtcgaa
ggccagaccctgtacgacgtcgacatcgaacagccgtcgaaggacaacaagaaatccaac
atctacaagggccgcatcacccggctcgaaccctcgcttgaagccgctttcgtcgaatac
ggcgcggaacgccacggcttcctgccgctcaaggaaatctcccgcgactacttccaggcc
ggggtcgatccgaacaaggccgggctgaaggaactcctgcgcgaaggccaggaagtcgtg
gtccaggtcgacaaggaagagcgcggcaacaagggcgccgccctgaccaccttcatctcg
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcccgc
cggatcgagggcgacgaccgcgccgagctgaagaaggcgatggacgcgctcaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgacgccgaagagctgcag
tgggacctggactacctgctgtcgatctggcgcgcgatcgccgaagccgcgctgaccaag
ccggcgccgttcctgatctaccaggagtcgcgcctgatcgtgcgcgccctgcgcgactac
atgcgctcggacatcggcgagatcctggtcgacaccccggagatgtacgccgaggcgctg
gacttcgtcgaacaggtgatgccgcacaacaagcgcaagctcaagcactacaccgacgac
accccgctgttcaaccgcttccagatcgaatcgcagatcgagggcgcctacgagcgcacc
gtgcgcctgccctccggcggcgcgctggtgatcgaccagaccgaggcgctgaccgcgatc
gacgtcaactcggcgcgcgccaccaagggcggcgacatcgaggagaccgcgttcaacacc
aacctggaggccgcggaggaagtggcgcgccagctgcgcctgcgcgacctgggcggcctg
gtggtgatcgacttcatcgacatgtcgagcaacaagcaccagcgcgacgtcgagaacaag
ctgcagaacgcgctgaagtacgaccgcgcgcgcgtccagctgggccgcatcagccgcttc
ggcctgatggagatgagccgccagcgcctgcgcccgtcgctgggcgaggccagccagatc
gtctgcccgacctgcgagggccacggccggatgcgcagcatcgagtcgctgtcgctgtcg
atcatccgcgtcgccgaagagcacgcgatgaaggacaacaccggccaggtgctggtgcag
gcgccggtggagatcgccaactacctgctcaacgagaagcgcaacgcgctgcgcgagatc
gagcagcgccacgatgcgccgatcgtgatcgtcgccgacgagcagctgcacaccccgcac
tacgaagtcacccgcatccgcgagaacgaactgggcgaggaaaccgcgcgccccagctac
cagcgcggcaccccgcgcaagctggcgacgatcgccttgaccaaggcccagctcaacatc
ccgccggcaccgatggtgaccaacgtgaagccggcccagcccgccccgttgcgcgagccc
aagccgatgccggtggaagcggagccgcgtccggtcgcggcggcggtaccggtcgtcgtg
gccccggccagcagcggtttcatcggctggctgaagtcgatgttcaacggcgcgcccgcc
ccggagccgcagccggtgaaggccgaggcacaaggcggccgccgcgaggagcgtggcaac
cgccgcgatcgcgatggccgcggcaaccgcgacaaccggcgcgacgacaaccgccgcaat
gcgcagaacgacaatcgcggcggcaacaagccgcagggcgacgcgccgaaacagcagcag
gcgcaaaagcagaaccagcagaagccgcagcaacaacagcagccgaagcaggacaagccg
cagaagcaacagcagcagaaccagcagaagccgctgcaacaacagcagccgaagcaggac
aagccgcaggcaccgaagccggcgccggccgaaaccgcagcggcttcgatcgccgctgtc
gtcgccgaggacgccacggccaaggtcgcggcaccgctcgagcaggcggtcgacgctgcc
gcgatcgcgatcccggcgcaggccgtcgccgccgaaaacgccagcgagtccggcgatgat
gccgcgggcgaaggcggctcgaagcgccgtcgcggacgtcgcggcggtcgccgccgtcgg
cgtggcgcgggcgaagccgccggtgccgccgacgaggcgatgctggatcaggacggcccg
ctggacgaagccctggccgcggatggctcgcagccggaattcgatttcgacgatatcgaa
gcgccaacgccggttgccgtcgaacgcgcgccggcgccggtcgccgaagtcgcacgcgtg
gtcgcggccgcgcagccggaggtgatcgcccccgcaccggccgcgatcgaagcgcccgtc
gtcgaggccatcgcgacgccggccgaagccgcgcccgcggcaacgcccgccgtagcgagc
gcacccgaaaccgccgtcgtgaccgaggcagcggcacccgcggtgatcgaacgcgttgcc
gaaaccgtcgcgccggcggaagtgccggtcgaaccggcagccgcgatcgcccaggccgat
gccgccgaagaggtcgtcgctgccgaggaggtcgccgccacggcggaggttgcgcaggca
gcgaccgcggtcgaggccgaaaccgtctcgccttcgccctcgcccgcggacgaagccctc
agccgcgccgagcaactgcgcgggctgttcgataccgcccgcaacgatgccggcaccccc
ccggcgcctacgcaggacgatgccgcggccgtcgaggcgaaccgcaacgcctga
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