Thermomonas aquatica: FHQ07_04890
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Entry
FHQ07_04890 CDS
T06025
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
thes
Thermomonas aquatica
Pathway
thes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FHQ07_04890 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thes03021
]
FHQ07_04890 (rpoB)
03400 DNA repair and recombination proteins [BR:
thes03400
]
FHQ07_04890 (rpoB)
Enzymes [BR:
thes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FHQ07_04890 (rpoB)
Transcription machinery [BR:
thes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FHQ07_04890 (rpoB)
DNA repair and recombination proteins [BR:
thes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FHQ07_04890 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
DOCK-C2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
QDA56701
UniProt:
A0A5B7ZNH6
LinkDB
All DBs
Position
complement(1009454..1013617)
Genome browser
AA seq
1387 aa
AA seq
DB search
MTTATQQYSFTEKKRIRKDFGKSRSILEVPFLLAIQVDSYREFLQEHAEPSKRADRGLHA
ALKSVFPISSYSGNAALEYVGYKLGEPLFDERECRNRGLSYGAPLKVTVRLVIYDRESST
KAIKYVKEQEVYMGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
FSARVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSVLLRALGYNNEEMLNEFFDINTFH
IEAEGVQLELVPERLRGETLDFDLADGDKVIVEAGKRITARHVKQLEAAGVSALAVPDSY
IAGRILSHDVIDPKTGELLASANDEINDDILGKLRKAGIASVGTLWVNDLDRGAYLSNTL
RIDGTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSSVGRMKFNRRIGR
DSVTGAPVLYDAKYFADRKDEESVRLRNECGAGSDILDVIKVLTEIRNGRGVVDDIDHLG
NRRVRSVGEMAENVFRVGLVRVERAVKERLSMAEADGLSPQDLINAKPVAAAIKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNI
GLINSLAVFARTNKYGFLETPYRKVVDGKVTDEIEFLSAIEEVGKVIAQANAPRDGKGNI
TAQFVACRFNGENELRPPSEVQFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLKSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEISGEHDAGV
DIYTLIKYTRSNQNTCINQTPLVNVGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWN
GYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDES
GVVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTV
IDVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILESAIYARLRETLLGKTANGGP
GVKKGDSVSSLVLDGLKKSDWLQLRMKDDDANDAIERAAKQLDAHRKEFDKRFDDKRGKI
TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYMANGETVDI
VLNPLGVPSRMNIGQVLEVHLGWAAKGLGQKIQRMLDAQAKIADLRKFLDEIYNHDTSTH
AHRVDLKQFSDAELLTLAQNLTDGVPMATPVFDGAAEAEIKKMLELAELPLSGQTVLHDG
RTGEAFEREVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAI
NMELEEH
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgccacccagcagtattcgttcaccgagaagaagcgcatccgcaaggacttc
ggcaagagccgttcgatcctggaagtgccgttcctgctcgccatccaggtcgactcctac
cgcgagttcctgcaggagcacgccgagccgtccaagcgcgccgaccgcggcctgcacgcc
gcgctgaagtcggtgttcccgatcagcagctacagcggcaacgccgcgctggaatacgtc
ggctacaagctcggcgagccgctgttcgacgagcgcgaatgccgcaaccgcggcctgagc
tacggcgccccgctgaaggtgaccgtgcgcctggtgatctacgaccgcgagtcgtcgacc
aaggcgatcaagtacgtgaaggagcaggaggtctacatgggcgagatcccgctcatgacc
gacaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcccagctgcaccgc
tcgccgggcgtgttcttcgaccacgaccgcggcaagacgcatagcagcggcaagctgctg
ttctccgcgcgcgtgatcccgtaccgcggctcctggctggacttcgagttcgacccgaag
gacgcgctgttcacccgcatcgaccgccgccgcaagctgccggtgtcggtgctgctgcgc
gcgctcggctacaacaacgaagagatgttgaacgagttcttcgacatcaacaccttccac
atcgaagccgaaggcgtgcagctggagctggtgcccgagcgcctgcgcggcgagaccctg
gacttcgacctggccgacggcgacaaggtcatcgtcgaggccggcaagcgcatcaccgcg
cgccacgtgaagcagctcgaagccgccggcgtgtccgcgctggcggtgccggacagctac
atcgccggccgcatcctctcgcacgacgtgatcgacccgaagaccggcgagctgctggcc
tcggccaacgacgagatcaacgacgacatcctgggcaagctgcgcaaggccggcatcgcc
agcgtcggcaccctgtgggtgaacgacctcgaccgcggcgcctacctgtccaacaccctg
cgcatcgacggcaccaagacccaactggaagcgctggtcgagatctaccggatgatgcgc
ccgggcgagccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcacc
ttcgagcgctacgacctgtcctcggtcggccgcatgaagttcaaccgccgcatcggtcgc
gacagcgtcaccggcgcgccggtgctgtacgacgccaagtacttcgccgaccgcaaggac
gaggaatccgtgcgcctgcgcaacgagtgcggcgcgggctccgacatcctcgacgtgatt
aaggtgctgaccgagatccgcaacggccgcggcgtggtcgacgacatcgaccacctcggc
aaccgccgcgtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtc
cgcgtcgagcgcgcggtcaaggagcgcctgtcgatggcggaggccgacggcctgtcgccg
caggacctgatcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcg
cagctgtcgcagttcatggaccagaacaacccgctgtcggaagtgacccacaagcgccgc
gtgtccgcgcttggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgac
gtgcacccgacccactacggccgcgtctgcaccatcgagacgccggaaggcccgaatatc
ggcctgatcaactcgctggcggtgttcgcccgcaccaacaagtacggcttcctggagacg
ccgtaccgcaaggtggtggacggcaaggtcaccgacgagatcgagttcctgtcggcgatc
gaggaagtgggcaaggtcatcgcccaggccaatgcgccgcgcgacggcaagggcaacatc
accgcccagttcgtggcctgccgcttcaacggcgaaaacgaactgcgtccgccaagcgaa
gtgcagttcatggacgtcagcccgatgcagaccgtgtcggtcgcggcggcgctggtgccg
ttcctggagcacgacgacgccaaccgtgcgctgatgggcgcgaacatgcagcgccaggcg
gtgccgacgctgaagtcgcagaagccgctggtcggcaccggcatcgagcgcgcggtggcg
cgcgactcgggcgtgaccgtgaacgcgcgccgcggcggcgtgatcgagcagatcgacgcc
ggccgcatcgtggtcaaggtgaacgaggcggagatctccggcgagcacgatgccggcgtc
gacatctacaccctgatcaagtacacgcgttccaaccagaacacctgcatcaaccagacc
ccgctggtgaacgtgggcgacgtggtcgcgcgcggcgacgtgctggccgacggcccctcg
accgacatcggcgagctggccctgggccagaacatgctgatcgccttcatgccgtggaac
ggctacaacttcgaagactccatcctgctcagcgagcgcgtggtggaggaggatcgctac
accacgatccacatcgaggagctgacctgcgtcgcccgcgacaccaagctcggcccggag
gaaatctccgcggacatccccaacgtctccgagcaggcgctgaaccgcctcgacgagagc
ggcgtggtgtacatcggcgccgaagtgcgcgccggcgacatcatggtcggcaaggtcacg
ccgaagggcgagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcctccgacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtg
atcgacgtgcaggtgttcacccgcgacggcatcgagaaggacaagcgcgcgcgccagatc
gaggaatccgagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctcgag
tcggcgatctacgcgcgcctgcgcgagaccctgctgggcaagaccgccaacggcggcccg
ggcgtcaagaagggcgacagcgtgtcctcgctggtgctggacggcctgaagaagtccgac
tggctgcagctgcggatgaaggacgatgacgccaacgacgcgatcgaacgcgccgccaag
cagctcgacgcgcaccgcaaggagttcgacaagcgcttcgacgacaagcgcggcaagatc
acccagggcgacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtg
aagcgccgcatccagccgggcgacaagatggccggccgccacggcaacaagggcgtggtc
tcgacgatcgtcccggtcgaggacatgccgtacatggccaacggcgagaccgtcgacatc
gtgctgaacccgctgggcgtgccgtcgcgcatgaacatcggccaggtgctggaagtccac
ctgggctgggccgccaagggcctgggccagaagatccagcgcatgctcgatgcacaggcc
aagatcgccgacctgcgcaagttcctcgacgagatctacaaccacgacaccagcacccac
gcccaccgcgtcgacctcaagcagttcagcgacgccgaactgctgaccctggcgcagaac
ctcaccgacggcgtgccgatggccaccccggtgttcgacggcgcggccgaggccgagatc
aagaagatgctcgagctcgccgagctgccgctgtccggccagaccgtgctgcacgacggc
cgcaccggcgaggcgttcgagcgcgaggtcacggtgggctacatgcacatgctgaagctg
aaccacctggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtcacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaagtc
tgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtcc
gacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgatggcgagcacgagatg
gtcgcgggcatgccggaatccttcaacgtcctcgtgaaggaaatccgcagcctggccatc
aacatggaactcgaggagcactga
DBGET
integrated database retrieval system
