Thermodesulfobacterium sp. TA1: F1847_04325
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Entry
F1847_04325 CDS
T06202
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thet
Thermodesulfobacterium sp. TA1
Pathway
thet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1847_04325 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thet03019
]
F1847_04325 (rnr)
03016 Transfer RNA biogenesis [BR:
thet03016
]
F1847_04325 (rnr)
Enzymes [BR:
thet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
F1847_04325 (rnr)
Messenger RNA biogenesis [BR:
thet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1847_04325 (rnr)
Transfer RNA biogenesis [BR:
thet03016
]
Prokaryotic type
tRNA degradation factors
F1847_04325 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
S1_RRP5
WHD_TBPIP
Spt6_S1
FISNA
DUF5457
HTH_TIMELESS
Motif
Other DBs
NCBI-ProteinID:
QER42010
LinkDB
All DBs
Position
833658..835805
Genome browser
AA seq
715 aa
AA seq
DB search
MPSKKKKRPFTKKKNSRRPVKKDDLHQKIFDVLKSANKPLLLREIYHRLNLSKEKRAEVK
EILNLLESQGKVLKIKKRKYSLPEQVSIVKGRLKVHPDGYGFVETEKGWVFIPPRFIGKA
LDGDIVLVRIDRVISKGPEGRILEVVERKRKNLVGYLVKRKKAYFVEPEDPRIPFEIYIP
KKKLNKAKEGNLVVTKIIQPTSEYGFPVGEIIKDLGDPLKLESHTWAVIYAYDLPHQWSE
ELISELKLLPEEVREEDKKGRKDLTHIPLVTIDGENARDFDDAVCVKKTSKGYKLWVAIA
DVAHYVKKNSFLDQEAYLRGTSVYFPTMVVPMFHEKLSNHLCSLNPKVDRLAMVVEIDFS
PEGEMINQKFYEGIINSHARLTYTEVKQMLVDRDKEVIKKYQDLYPMLDTAAELACILRE
KRLKRGSLDFDLPEPEIIVNIKGEIENIVKRERNLAHMLIEDFMIAANEAVAEYLTKKDY
PFLYRVHESPDINKLKQLSEIFLNYGIEVTFPEEITPQFFQELISQFSGKTYAPLFNHLL
LRSLKQAKYTPENIGHFGLASTCYCHFTSPIRRYPDLVVHRTLKAALKRRKPVYKEEDLE
KMGKHLSERERTAEEAEREVLKRFQAFFMKDKIGMEFQGIITGVTAFGFFVDLIEYMVTG
VVRLIDLSDDFYVLDDKGIALRGQKTGKTFQIGQTVRVKVKEVDLRRFYINFLLA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaaagaaaaaaagaccttttactaagaaaaaaaacagtcgcagacctgtt
aagaaagatgaccttcaccaaaaaatcttcgatgttttaaaatcagccaacaaacctctt
ttattaagagagatatatcatcgtttaaatctttctaaggaaaagagggctgaggttaaa
gagattttaaatcttttagaatctcaaggaaaggttcttaaaataaagaaaagaaaatat
agccttccagaacaagtttctattgtaaaaggaagactaaaagttcatcccgacggttat
ggttttgtagaaactgaaaaaggatgggtttttattccaccaaggtttatagggaaggct
ttagatggagatatagtgttagtaagaatagatagagtaatttcaaagggaccagagggt
agaattcttgaggttgtggaaagaaaaagaaaaaatttagtaggctacttagtaaaaaga
aaaaaggcttattttgtagaaccagaagacccaaggattccttttgagatttatatacct
aaaaaaaagcttaataaagccaaagaaggtaatttagtagtaactaagataattcaacct
acttcagaatacggattccctgtaggtgaaataatcaaagatttaggagacccgcttaaa
cttgaatctcatacctgggctgtaatatatgcttatgaccttcctcatcagtggtctgaa
gaattgatctctgaattaaaactattaccagaagaagtaagagaggaggataaaaaagga
agaaaagacttaacccacatccctttagttaccatagacggtgaaaatgcaagagatttt
gacgatgcggtttgtgttaaaaaaacttcaaaaggatataaactttgggtagcgatagcc
gatgtagcccattatgtgaaaaaaaattcatttttagaccaggaagcctatctcagaggg
accagcgtttatttcccaacgatggtggttccgatgtttcatgaaaaactttctaatcat
ctctgtagtttaaatccgaaagtagatagattagctatggtagtagagatagattttagc
cctgaaggagagatgattaaccagaagttttatgaagggattatcaattctcatgcgcgc
ttaacctatacagaagttaaacagatgttggttgatcgcgataaggaagttatcaaaaaa
taccaagacctttatcctatgcttgatacagcagctgaacttgcttgcattttaagagaa
aaaagattaaaacgtggaagtttagattttgatttgccagagcctgagattatagttaac
ataaaaggagagatagaaaatatagtaaaacgggagcgtaatttagctcatatgttgata
gaagactttatgatagcagctaatgaagcggtagcagaatatttaactaaaaaagattat
ccctttttataccgagtacatgaatcccctgatatcaataaattaaagcaactttctgag
atttttcttaattatggaatagaggttacctttcctgaagaaataacccctcaatttttc
caagaattgatctctcagtttagcggcaaaacatatgcgcctctgtttaaccacttattg
ctaagatctttaaaacaggctaaatatacacctgagaacataggacattttggtttggct
tcaacctgttattgtcattttacttctccaataagaaggtatcctgatttggtggttcat
agaactttaaaagctgctttaaaaagaagaaaaccagtttataaagaagaagacttagaa
aaaatgggtaagcatctttctgaacgcgaaagaacggctgaagaagcagaaagagaagtt
ttaaaaaggtttcaagccttttttatgaaagataagataggaatggagtttcaaggtatc
attaccggggtcactgcttttggtttttttgtagacttgatagagtatatggtaaccggg
gtagtgaggcttatagatctttcagacgatttttatgttttagacgataaaggtattgct
ttaagaggacaaaaaacaggtaaaacttttcaaataggtcaaacggtaagagtaaaagta
aaagaggtagatttaagaaggttttacatcaattttttgcttgcttag
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