Thermodesulfobacterium sp. TA1: F1847_08870
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Entry
F1847_08870 CDS
T06202
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thet
Thermodesulfobacterium sp. TA1
Pathway
thet03030
DNA replication
thet03430
Mismatch repair
thet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1847_08870 (dnaE)
03430 Mismatch repair
F1847_08870 (dnaE)
03440 Homologous recombination
F1847_08870 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thet03032
]
F1847_08870 (dnaE)
03400 DNA repair and recombination proteins [BR:
thet03400
]
F1847_08870 (dnaE)
Enzymes [BR:
thet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F1847_08870 (dnaE)
DNA replication proteins [BR:
thet03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F1847_08870 (dnaE)
DNA repair and recombination proteins [BR:
thet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F1847_08870 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QER42847
LinkDB
All DBs
Position
complement(1758374..1761793)
Genome browser
AA seq
1139 aa
AA seq
DB search
MGEFVHLHLHTEWSLLDGAIRIKDLVKRLLDYNLPGCAITDHGTLYGIIHFYKALKDAGL
KPIIGCEFYVAENSRVDKKVSKRGEAGHHLVLLAKNEIGYKNLLKLASLAYLEGFYYRPR
IDKELLAKHHEGLIALSACLEGEIPKLLLFNQTDKAVEVAKWFKELFKEDFYLEVQRNDL
PEQEICNQKILDIAESLNIKCVATADCHYLDKEDALAHEVLLCIQTGHKLSDPDRFKFNT
DKLYLASAEEMRERFKDLPAEVITNTLEVFEKVNLELKTGEVLFPKAKIPEGETAEDWFA
KKAREGLEKRLLELEQRNQLAADKEVYRQRLEQELEVIIEKGYASYFLIVSDFIEWARSK
GIPVGPGRGSAAGALTSYALGITNLDPIRWGLLFERFLNKERPSLPDIDVDFCMERRDEV
IEYVAQTYGKDYIAKIATFGQLKAKQVVRDVGRVLGFKPKEIDPIAKMISAGPDVSLEKE
LERPEFQELMQKNEEIKKLFTLAKRLEGLPRHASQHAAGVIISGKSIIEVAPLMKGEENE
ILVQFDMKACETVGLIKFDFLGLKTLTIIDKTLKLIQKYEGIEIDLNQIPLDDPKTFELL
RAGETDGVFQLESQGMKDLLRRLKPSDFNDLIAVLALYRPGPLEGGLVDQYIETKHGRRK
PEYPHPLLEPILKETYGVIVYQEQVMQIAQVMAGYSLGEADLLRRAIGKKEKELMESLKE
EFVRRSVERGIPENTAKTVFDLIEKFADYGFNKSHSAAYALVAYQTAYLKAHYPVYFIAS
ILTYEANKSEEVSKYISVATEMGISILPPDINLSEIGFSVEKGAIRIGLQAVKNVGEEAV
NEIINKRPYRSFLDFCNKVDTKKANRKTIEALIKAGAFDSIEPNRAKLMHNLPSVLSFTS
QNKFSSLFGQATLLNPATSYTLEEVPEWDLDTKLAFEKEALGFYLTDHPIKRLRPWIDIF
TPYNLENISQVEDGSRLILLGLVSEVKLKQTKNGDKMAILRIEDEFSSARALIFPDLYKQ
NFSVLNEGAILWVRLTVDKDEESLTLLVEDLAPINDFKLFKEGVLKLIIPSNLINQQFLE
FLKNFLNREEKNALPIKLQLHYPDAIVHFELNEAKLSPSYENLFLLLDNFPQLKILFSE
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgggagaatttgtccaccttcatcttcatactgaatggagcctgcttgacggtgctata
aggattaaagatttagttaaaagacttttagactataatcttcctggatgtgctatcacc
gaccatggaaccttatatgggattattcatttttacaaagctctaaaagatgcaggacta
aaacctatcatcggatgcgagttttatgtagcagaaaactcccgagttgataaaaaggta
tccaaacggggtgaggcggggcatcacttagtccttttggctaaaaacgagataggctat
aaaaatttacttaagcttgcctctctggcttatttagaaggtttttactacagaccaagg
atagataaagaacttttagccaaacatcatgaaggattgatagccctttcagcctgtttg
gaaggagaaattcctaaactccttttgtttaatcaaacagacaaagcagtagaagtagcc
aaatggtttaaagaattgtttaaagaggatttttaccttgaagtccaaagaaacgacctg
ccagaacaagagatttgtaatcaaaaaattttagatatagccgaaagccttaacataaaa
tgtgtagctaccgcagactgtcattacttagataaagaagatgccttagcccatgaggtg
ttactctgcatccaaacaggacacaagctttctgacccagaccggtttaagtttaacacc
gataagctttatttagcaagtgcagaggaaatgagagaaaggtttaaggacctgccggct
gaggtcattaccaataccttagaggtctttgaaaaagttaacttagagcttaaaaccgga
gaggtccttttcccaaaggctaaaatccctgaaggggagactgcagaagattggtttgct
aaaaaggcaagagaaggtcttgaaaaaaggcttttagaattagaacaaagaaaccaactg
gctgcggacaaagaggtttatcgtcagagattagaacaagaattagaggttatcatcgaa
aaaggatatgccagctactttcttatcgtttctgacttcatagagtgggcacggtcaaaa
ggaataccagtcggtccaggaagagggtctgcagcaggtgcccttacctcttatgcctta
gggattaccaaccttgatcctataagatgggggcttctttttgaaagatttttaaacaaa
gaacgtccaagccttcctgatatagacgttgatttttgtatggaaagaagagatgaagtt
atagaatatgtagcccaaacctacggaaaagactacatcgctaaaattgcaacctttggt
cagttaaaagctaaacaggtggtaagagacgtaggcagagtcttagggtttaaacctaaa
gaaatagaccctatcgctaaaatgataagcgcaggacctgatgtgtctttagaaaaagag
cttgaaagaccagaatttcaagaacttatgcaaaaaaacgaagagattaaaaaacttttt
acactggctaaaagattagaaggccttccgagacatgcaagtcagcatgcagccggagtt
atcatctcaggaaaatcgatcatagaagtagcccctttgatgaaaggagaagaaaacgaa
attttagtccagtttgacatgaaggcctgtgaaaccgttggccttattaagtttgatttt
ttagggcttaaaacccttaccatcatagacaaaacccttaaacttatccaaaaatacgaa
gggatagaaatagatttaaaccagataccgcttgatgatcccaaaacctttgaattactg
agagctggagaaactgacggagtgtttcagttagaatctcaagggatgaaagacctttta
agaaggcttaaaccttctgattttaacgacctaatagcggttttagccctctatcgtcca
ggacctttagaaggtggtttggtagaccaatatatagagactaaacatggtagaagaaag
cccgaatatcctcatcctcttttagaaccgatccttaaagagacctacggagtcattgtt
tatcaagaacaggtcatgcaaatagcccaagtgatggcaggttatagcctcggagaagca
gaccttctcagacgcgccatcggaaaaaaagaaaaagaattgatggaaagtttaaaagaa
gagtttgttagaaggtctgtagaaagagggataccagaaaatactgctaagacggttttt
gacctgatagaaaaatttgctgactacggatttaacaagagtcactctgcagcctatgcc
ttggtagcttatcagaccgcctatttaaaagctcattatcctgtttattttatagcttct
attcttacttacgaagctaacaaaagcgaagaagtaagtaaatacatctcagtagctact
gaaatgggtatctccatacttcctcctgatataaacctaagtgaaataggtttctcagta
gagaaaggggctatacgtataggacttcaagccgtaaaaaatgtaggggaagaagcagta
aacgaaatcatcaataaacgaccttaccgttcttttctggatttctgcaacaaggtagac
accaaaaaggccaatcgaaaaaccatagaagcccttataaaggccggagcttttgacagc
atagaaccaaacagagcaaaacttatgcacaacctaccttcagttctttcttttacctct
caaaacaagttttcttctttatttgggcaagccacccttttaaatccagccacttcttat
accttagaagaagttccagaatgggatttagacactaaacttgcttttgaaaaagaagcc
ttaggattctaccttacagaccacccaataaaaagacttcgcccttggatagacattttt
accccctataatttagaaaatatttcccaagtagaagatggctctcggttaattttgctt
gggttggtttctgaagtaaagcttaaacagaccaaaaacggggacaagatggctatcctt
aggatagaagatgagttttcttcggcaagagcactgatttttccagacttatataaacaa
aacttttccgttttaaacgaaggagccatcctttgggtacgccttaccgtagataaagac
gaagaatcgttaacccttttagtagaggaccttgctcctatcaacgatttcaagctgttt
aaagaaggggtactcaaacttattattccttctaatctgattaaccaacagtttttagaa
tttttgaaaaactttttaaacagagaggaaaaaaacgcattacctataaaactccaattg
cattatcctgatgctatagtacactttgaactaaacgaagctaagctttccccttcctat
gagaacctctttttacttttagataattttccccagctaaaaatactcttttctgaataa
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