Thermoleptolyngbya sichuanensis: HPC62_17385
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Entry
HPC62_17385 CDS
T06607
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
theu
Thermoleptolyngbya sichuanensis
Pathway
theu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC62_17385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theu03019
]
HPC62_17385
03016 Transfer RNA biogenesis [BR:
theu03016
]
HPC62_17385
Enzymes [BR:
theu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPC62_17385
Messenger RNA biogenesis [BR:
theu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPC62_17385
Transfer RNA biogenesis [BR:
theu03016
]
Prokaryotic type
tRNA degradation factors
HPC62_17385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
OB_cyt-4
OB_HELZ2
Rrp44_S1
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
QKD83731
UniProt:
A0A6M8BJ75
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All DBs
Position
complement(4162000..4164393)
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AA seq
797 aa
AA seq
DB search
MDFSIASLLSNFPDDKLVAPKALEKKLNCEDDASLRRLQIALDALEKIGILVKERGKYRR
VFEDDVVEGKLRCSSKGFCFAIQDIEGSEDIYIRESQLNTAWNGDRVLVRVTKEGSRRRS
PEGEVRLILERSNSSVLARVKKTEDGQYRALPLDDRLLFELELTPDGEPLEESVDQLVHV
EIARYPLGQHPPIGRVAQILGSDAQAASDIDIVCCKHDLPRGFSEAVLEAAKALPTKLRK
TDLKKRLDLREQLTVTIDGPDHPHSPAIDDALSVEKVGDDEWRLGIHIADVSYYVAARSP
VDLEAQKRGTSVFLGELVVPMLPEHLHRCCSLLPGEDRLAISVLVTLNAAGEVQDFEIQP
SVVRVDQHLDYQQAQAVLLRDDPEAAAEARYPLPSAKELKHLEPVFELVDNLFAISQAVA
AQRLARGAFDLNLPESIFPDEHNPELGKFLSTNFQYDDEGELGAMVVSSLLPARTIVTEL
MLLANQLVALHLQCLQVPAIYRVHRTPDPSDVQELVKLVNNMDIEYQLEDEEVVHPRDYQ
RLTQQFAESYAERVLTYLLLETLKPAVYSTTPGTHFGLALDNGYTHFTSPLRRYPDLLVH
RALHAVFEHGRDRKSTRSKDKVNLFSSECHGAIDWKVLPPEVHDELEEYFNSIVNHLTER
EKLAQEAESDLEGLKKAEYMQERTGETFHGLITGVQSYGFFVEIEELLVEGLVHVSSLKD
DWYEYRSRQQKLVGRKNRKQYRLGDRVEVQVKSVDYYRQQIDLVAVGGGSEATDDDEDLL
ETEADLLETEDLSEEEE
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggacttttcgatcgcctcactgctctccaacttcccagacgacaagctggtcgctccc
aaggccctggagaaaaagctgaactgtgaagatgatgccagcctccgccgcttgcaaatt
gcgctggatgccctagagaaaatcggcattttggttaaggagcggggcaaatatcgccgc
gtctttgaggatgacgtggtggaagggaagttgcgctgctctagcaagggcttttgcttt
gcaattcaggatattgaagggtcggaggatatctacatccgcgagagccaattgaatact
gcctggaatggcgatcgcgtcttggtgcgcgtgaccaaagagggcagccgccgccgcagt
ccagagggcgaagtccggctgattttagaacgctccaattcctccgtgctggcgcgggtg
aaaaaaaccgaggacgggcagtatcgcgccctgccgctggacgatcgcctcttgtttgag
ctagagctaacgcccgatggcgaaccattagaggaatccgtcgatcaactggtgcatgta
gaaattgcccgctatcccctgggtcagcatccgcccattggtcgagtggctcagattttg
ggcagcgatgcccaggcggcctcggatatcgacattgtgtgctgcaagcatgacctgccg
cgcgggttttcggaagcggtgctggaggcagccaaagcactcccgaccaagctccgcaaa
acggacttgaaaaagcggctggatctgcgggaacagttgactgtcacaatcgacgggccc
gatcatccccatagcccagccatcgacgatgccctgagtgtggaaaaagtgggcgacgat
gagtggcgcttggggattcacattgccgacgtgtcgtactacgttgcagcgcgatcgccc
gtcgatctggaagctcagaagcgcggcacttcggtctttttgggagaactcgtcgtgcct
atgctgccggaacatctgcaccgctgctgttcgctgctgcccggtgaagaccgtctggcg
atttcggtgctagtgaccttgaacgcagcaggcgaagtgcaggatttcgagattcagccc
agcgtggtgcgggtagatcagcatctcgactatcagcaggcccaggcggtgctgctgcga
gacgacccagaagccgctgccgaagcccgctacccgctgccctctgccaaggagctaaaa
cacctggaacccgtgtttgaactggtggacaacctgtttgccatcagccaggctgtggcg
gcgcagcggttggcgcggggcgcgtttgacctgaacctgccggagagcatctttcccgac
gaacacaaccccgaactaggcaagttcctctcgaccaatttccaatacgacgacgaaggc
gaactgggcgcaatggtggtgtcgtcgctgctacccgcccgcacgatcgtaacggaactg
atgctgctggcgaatcaactggtggcgctgcatttacaatgcctccaggttcccgccatc
taccgggttcaccgcacgcccgacccctccgacgtgcaggaattggtaaagctggtcaac
aacatggacatcgaataccagcttgaagacgaagaggtcgtccatccccgcgattatcag
cgactcacacagcaatttgcagagtcctatgccgagcgggtgctgacctatctgctgctg
gagacgctgaagcctgcggtctatagcaccacgccggggactcactttgggcttgcactg
gacaatggctatacccatttcacctcgccgctgcgccgctatcctgacctgctggtgcat
cgggcgctgcacgcggtgtttgagcatgggcgcgatcgcaaatctacccgctccaaggac
aaggtgaacctgtttagcagcgaatgtcacggcgcaatcgactggaaggtgctgccgcca
gaggttcacgacgagctagaggaatatttcaacagcatcgtcaaccacctcaccgagcgc
gaaaagctggcgcaggaggcagaatctgacctagaggggctgaaaaaagccgagtatatg
caggagcgcaccggtgagaccttccacgggctgattacgggggtgcagtcctatggtttc
tttgtggaaatcgaggaactgctagtggaagggctggttcacgtcagttccctgaaagac
gactggtacgaatatcgctcgcgtcagcaaaagctggtaggccgcaagaatcgcaagcag
tatcgactgggcgatcgcgtcgaggtgcaggtcaagagtgtggattactaccgtcagcag
attgatctagtcgcggtcggcggtggtagcgaagccaccgacgacgacgaggacttgcta
gaaaccgaggccgacctgctggaaacagaagatctatccgaggaggaagagtag
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