Thermoleptolyngbya sichuanensis: HPC62_22435
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Entry
HPC62_22435 CDS
T06607
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
theu
Thermoleptolyngbya sichuanensis
Pathway
theu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
theu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC62_22435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
theu03019
]
HPC62_22435
03009 Ribosome biogenesis [BR:
theu03009
]
HPC62_22435
Enzymes [BR:
theu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPC62_22435
Messenger RNA biogenesis [BR:
theu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPC62_22435
Ribosome biogenesis [BR:
theu03009
]
Prokaryotic type
rRNA helicases
HPC62_22435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QKD84575
UniProt:
A0A6M8BQK0
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All DBs
Position
5394407..5395825
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AA seq
472 aa
AA seq
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MTLSFTSLGLSEARARHLEKAGFTAPTPIQAQAIPHLLSGRDVVGLAQTGTGKTAAFSLP
ILEQIDVNNNAVQALILTPTRELAIQVYQSIRTLTDDRRLKILPTYGGQSIDLQINRLQR
GVQIIVGTPGRVLDLLKRGDLKLNKLGWLVLDEADEMLNMGFIQDVEKILSQSPPERQTA
FFSATMDPSIRELAAKFLRSPVTVSIEQPKAAPTRINQVVYMVPRGWTKARALQPILELE
DPESALIFVRTRKAAADLTRQLQAAGHSVDEYHGDLSQSQRERLLLRFRQRQVRWVVATD
IAARGLHVDDLSHVINYDLPDSVESYVHRIGRTGRAGKEGTAITLIQPLDKRKLRDIERH
IRQQLQAGTIPTRAQIEARYLEKLQGQLREALVGDRLASFLPIVTQLSEEYDMRAIAAAA
LQMAYDQTRPAWMRGDHAYSDDLPVEESRPRSDYSSGPKPKPIKRSKTSVNE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttcattcactagtctgggtttgtctgaggcgcgggcgcgccatctagaaaaa
gctggatttaccgcaccaacaccgattcaggcgcaggcaattccccatctgctgtcgggg
cgcgacgtggtgggtctggcccagacaggaacgggcaaaacggcggccttttcgctgccc
attttggaacaaattgatgtcaacaacaacgcggtgcaggcgctcatcctaacgccgacc
cgcgagctagcgatccaggtctatcagtcgattcggacactgacggacgatcgccgcctg
aaaattttgccgacctacggcggacagtccatcgatctgcaaatcaaccgcctccagcgg
ggcgtgcaaattatcgtgggcacgcccggtcgcgtgctggacttgctgaagcgaggcgac
ctgaagttgaacaagctgggctggctggtgctggatgaagccgatgagatgctgaacatg
ggctttattcaagacgtggaaaaaatcctgagccagtcgcctccagagcggcagaccgcg
tttttctctgccacgatggatccgtcgattcgcgaactggcggccaagtttttgcgatcg
cccgtcaccgtcagcatcgagcagcccaaggccgccccgacgcggattaatcaggtggtg
tacatggtgccgcggggttggacgaaagcccgcgccctccagcccattttggaactggaa
gatcccgaatcggcactgatcttcgtccgcacgcgcaaagccgccgcagacctgacccgc
caactgcaagccgccgggcacagcgtcgatgagtatcatggcgacctcagccagtctcag
cgggaacggctgctactgcgcttccggcagcgtcaggtgcgctgggtagtggcgacagac
attgccgctcgcggtctgcatgtggacgatttgagccatgtgatcaactacgacctgccc
gacagcgtggaaagctacgtccaccggattggtcgcacgggtcgtgcgggcaaagagggc
acggcgattacgctgattcagccgctagacaagcgcaagctgcgggacattgagcggcac
atccgccagcagttgcaagcgggcacaatcccgacccgcgcccagatcgaagcccgctat
ctggagaagctccaggggcaactgcgggaagcgctggtgggcgatcgcctcgcctccttc
ctgccgattgtgacgcaattgagtgaggagtacgacatgcgggcgatcgccgctgcggcc
ttgcagatggcctacgaccagacgcgccccgcttggatgcgtggcgaccatgcctactcc
gacgacttgcccgtggaagagagtcgtcctcgcagcgactatagcagcgggcccaagccg
aagcccatcaagcgctccaaaacgtcggtcaatgagtag
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