Thermodesulfomicrobium sp. WS: TDMWS_00620
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Entry
TDMWS_00620 CDS
T08730
Name
(GenBank) penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew00550
Peptidoglycan biosynthesis
thew01100
Metabolic pathways
thew01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
TDMWS_00620
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
TDMWS_00620
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
thew01011
]
TDMWS_00620
Enzymes [BR:
thew01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
TDMWS_00620
Peptidoglycan biosynthesis and degradation proteins [BR:
thew01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
TDMWS_00620
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
BDU99976
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All DBs
Position
complement(64579..66399)
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AA seq
606 aa
AA seq
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MYCCAGGSGMERFKPSQDFPLWAGPNVLVVLCVLLFATLGVRLWYLQVVKGDVYHDKAQE
NRIRQRVLYAPRGVIRDALGTLVAENVPAYAVAVVREECPDINATLDQIAWWTGEDRQWL
QKSFEQGKRRTKSFEEQVVVPNIPFEVVARIESERHHWPGVSVVVRPKRFYPTGSLLAHV
LGYVARANDKELAQDPELLLGDNVGKLGVELALERRLRGRKGLEEFEVDATGRELGSHRL
YDPVAGEDLHLALQLPLQRAGVRALAGKAGAVVVLDADTGHVLAMVSSPSYDPNEFVTGI
SQERWNALIDDPLHPMQNRPIQSAYPPGSVFKLVMAGAGLSTGAITPSTTVYCNGKYSVG
NREYRCWRRGGHGKVDLRKSIRESCDVYYYALGERLGADAISDFARRCGLGEVTGVDLPH
ERSGLVPSPAWKQERFGRKWVGGDTINMSIGQGYVVTTPVQIARLVAALVNGGRVLRPLL
LASDMPEEQGRLPMSDATRRLITDAMVAVVQEEGGTARVVARPGIRVGAKTGTAQVVKLM
ERYEKKETQEIPYKYRDHAWLAAFAEKDGRRYALVAFVEHGGHGGSEAGPVVGAMLDALF
GLGEAP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtactgctgcgccggcgggagcggcatggagcggtttaaaccttcccaagattttccg
ctttgggcaggccccaatgtcctggtcgtgttgtgtgtgctccttttcgcaacgcttggg
gtgcggctgtggtacttgcaggtggtcaagggcgatgtctaccacgataaggcccaggaa
aatcgcatccgccaacgggtgctctatgccccacgtggggtgattcgcgatgccctgggg
acgttggtggcggaaaacgtgccggcctatgccgttgccgtggtgcgggaggagtgcccc
gacatcaatgccaccctcgatcagatcgcttggtggaccggcgaggatcggcagtggctg
caaaagagtttcgaacaaggcaaacggcgcaccaaaagttttgaagaacaggtggtcgtt
cccaatatcccctttgaagtggtggcgcggatcgagagtgagcgtcaccattggccggga
gtgagcgtggtggtgcggcccaagcggttttaccccacaggctccttgcttgcccatgtg
ctcggatacgtggcgcgtgccaacgacaaagagctcgcccaggatccggaactgcttttg
ggcgacaacgtggggaagctgggggtggagctggccttggagcggcgtttgcggggacgc
aaggggcttgaggagtttgaggtggacgccacggggcgggaactgggctcccaccgtttg
tatgatccggttgcgggagaagacttacacctggcgctgcaactgccgctgcagcgggca
ggggtgcgggccctggcgggcaaggcaggcgccgtggtggtgctcgatgccgatacaggc
catgtgctcgcgatggtgagctcgccgagctacgaccccaatgagtttgtgaccggcatt
tctcaagagaggtggaacgccctcatcgacgacccgctgcaccccatgcagaaccggccg
atccagagtgcctacccgccgggatcggtcttcaagctcgtcatggcgggtgcggggttg
agcaccggcgcgattactccgtccaccacggtctattgtaatggcaaatatagcgtgggc
aaccgtgaataccgctgctggcgccgcggcggccatggcaaagtggatttgcgcaagtcc
atccgggagtcctgtgatgtctactactatgccctgggtgagcggctgggggcggacgcc
ataagcgattttgcccggcgctgcggccttggggaggtgacgggagtggaccttccgcat
gagcgcagcggcctggtcccctcgcccgcatggaaacaggagcgcttcggccgcaagtgg
gtgggaggcgataccatcaacatgtccatcggtcagggatacgtggtcaccactcctgtg
cagatcgctcggctggtggcggccttggtcaacgggggccgcgtgctgcggccgctcctt
ctggcctcggacatgccggaggagcaagggcgtctgcccatgagtgatgccacgcgccgt
ctgatcaccgacgccatggtcgctgtggtgcaggaagagggtggtactgcccgggtggtg
gcccggcccggcattcgggtgggggccaagaccggtacggcccaggtggtcaagctcatg
gagcgttacgaaaagaaggaaacccaagagattccctataagtatcgagatcatgcgtgg
cttgccgcttttgccgaaaaagatgggcggcgctacgcgttggtggcttttgtggagcac
gggggccacggcggctccgaggccgggccggtggtgggtgccatgctggatgcccttttt
ggtttgggagaagcgccatga
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