Thermodesulfomicrobium sp. WS: TDMWS_00690
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Entry
TDMWS_00690 CDS
T08730
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDMWS_00690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thew03019
]
TDMWS_00690
03009 Ribosome biogenesis [BR:
thew03009
]
TDMWS_00690
Enzymes [BR:
thew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TDMWS_00690
Messenger RNA biogenesis [BR:
thew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TDMWS_00690
Ribosome biogenesis [BR:
thew03009
]
Prokaryotic type
rRNA helicases
TDMWS_00690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
BDU99983
LinkDB
All DBs
Position
complement(70601..72472)
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AA seq
623 aa
AA seq
DB search
MHTESIEHVEAAASYGEARWEDLAEPLRQGATRLGWQDLMPVQRRVLPVLAAGRDVMVQS
RTGSGKTGAFLLPMGSMVRRDGGVQALVLTPTRELAVQVCRDAEILFADVGLTPVAIYGG
VGFRPQVQALEAGAQVVVGTPGRILDHLLRGTLHLDALRVLVFDEADRMLSMGFYPDMKQ
LQRYLPSGLQTAMFSATYPGYVQRLAAQFLKDPIGISLSQDQVHVHDIVHVQYRVPALQK
SRALVKIIEMENPSSAIVFCNTKSDVHFVSVVLQRFGYETGELSADISQSAREAVLDDLR
RGRIKFLVATDVAGRGIDVPDLSHVFQYQPPQDPEAYVHRTGRTGRAGAAGVAISLVSGV
EELDLAAIGRRFGITIEDRTLPSDAEVQATVAQRAVSLLEAALRRADNIQKERLQRFEPL
VADLAESEDGRILLAMLVDQFYQSVFHAVELPATGPLLAASVPPAAGRGSAPGEVPSSEE
APAREKRRRRRSRKKKAPAAPVVESGPSEALAAPEGEHAPLEGLPRQEEPPVTAAPSDPS
AASEPLVASDAEALGDAPGGDEGAEARPKSRRRRRRPRKNGTAKPAQASGTEDPQKGAPV
PASVPERREAPALGSRRKKIFLE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgcatacggaatcgatagaacatgtggaagcggcggcctcgtacggtgaggcccgctgg
gaagatttggcagagccattgcgccaaggggcgacgcggctcggctggcaggaccttatg
ccggtgcagcgccgtgtgctgccggtcctggccgctggccgggacgtcatggtgcaatcg
aggaccggcagtggcaagaccggggcctttcttttgcccatgggctccatggttcgccga
gatggcggggtacaggccttggtgctcacccccacccgcgagctcgccgtgcaggtatgc
cgggatgcggagatcctgtttgccgatgtagggctcacgccggtggccatttacggcggc
gtcggtttccgaccgcaggtgcaggcgctggaggccggggctcaggtggtggtcggcacc
ccggggcggattctcgatcatttgctgcgcggcacgctgcacctcgacgccttgcgggtg
cttgtctttgacgaggccgaccgcatgctctccatgggcttttatccggatatgaagcag
ttgcagcgctacctgccttctgggctgcagacggccatgttctccgcaacgtaccctggg
tatgtccagcgcttagcggcgcaattcctcaaggatcccataggtatttccttgagtcag
gatcaagtgcacgtccacgatatcgtccatgtgcagtatcgtgtgccggcgctgcagaag
agccgcgccttggtcaagatcatcgagatggaaaatccctcttcggccatcgtgttttgc
aacaccaaatccgatgtgcatttcgtctccgtggtgctccagcgctttggctatgagacc
ggcgaattgtccgccgatatttcgcagtcggcgcgggaggccgtgctcgacgatttgcgg
cgcgggcggatcaaattcttggtggccacggacgtggcgggccgcggcatcgacgtgccg
gacctctcccatgtgtttcaataccagccgccgcaagaccccgaggcgtacgtgcatcgc
accgggcgcactggtcgggccggggccgccggggtggcgatttctttggtctctggggtg
gaggaactggatttggcggccatcggccggcgttttggcatcaccatcgaagaccgcacc
ctgccttccgatgccgaggtccaggccaccgtggcgcagcgggcggtatccttgctggag
gccgcgttgcgccgggcggacaatatccagaaagaacgcttgcagcgctttgaacccttg
gtggcggacttggccgaaagcgaggatggccgcatcctgttggccatgctcgtggaccaa
ttctaccaatcggtctttcacgccgtggaacttcctgccacaggaccgcttttggccgcg
agcgtgccgcctgccgcaggccgcggtagtgcgccgggcgaagtgccatcgtcggaggag
gccccggcgcgtgagaaacgtcggcgtcggcgttcgcgcaagaagaaggcccctgcggcc
ccggtcgtcgaaagcggccccagcgaggctttggccgcgccggaaggggagcatgcgcct
ttggaggggctgccccgccaggaggagcctcccgtgaccgccgccccgtcggatccgtcc
gccgcgtctgagcccttggtggcttcggatgcggaagctttgggtgatgcgcctggcggg
gatgagggggctgaggcgaggcccaagagtcgtcggcgccgtcgtcggccgcgcaaaaac
ggaaccgccaagccggcgcaggcaagcggtacggaagacccgcaaaaaggtgcgcccgta
ccggcctctgtcccagagcggcgtgaggcgccggcgcttggttcacgacgcaagaagatc
ttcttggaataa
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