Thermodesulfomicrobium sp. WS: TDMWS_01810
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Entry
TDMWS_01810 CDS
T08730
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TDMWS_01810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thew03021
]
TDMWS_01810 (rpoC)
03400 DNA repair and recombination proteins [BR:
thew03400
]
TDMWS_01810 (rpoC)
Enzymes [BR:
thew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TDMWS_01810 (rpoC)
Transcription machinery [BR:
thew03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TDMWS_01810 (rpoC)
DNA repair and recombination proteins [BR:
thew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TDMWS_01810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
BSH_YknX
BSH_RND
Motif
Other DBs
NCBI-ProteinID:
BDV00096
LinkDB
All DBs
Position
complement(171530..175684)
Genome browser
AA seq
1384 aa
AA seq
DB search
MTLDDLFTQRGSATTLFNSQNLKAIGISLASPEKIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKSLPSKIGTLLDMTMADLEKVLYFDSYIILDPGETTLQKKQVISEEQYFQILDHYGED
AIKVGMGAESIKLLLQELDLPTLRVQLREESQTTRSVTKKKKIAKRLKIIEAFLESGNKP
EWMILDVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIIRN
EKRMLQESVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPSLKLHQCGLPKKMALELFKPFVYAKLEERGIASTIKSAKKMVEREDVAVWDVLEE
VVREYPILLNRAPTLHRLGIQAFEPLLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSI
EAQIECRVLMMSSNNILSPANGSPIIVPSQDIVLGLYFLTVERPFGKGEGMVFADPGEVI
CALDAGHLDLHSRIKVRIDGQLVPTTPGRILVREIVPPQVPFDVYNRELSKKAIGRLVGE
AYRLAGTKATVLLCDKLKDLGYEYSTRAGFTVCVKDLTIPAKKEEILARSYAEVADIEQQ
YRDGIITRTEKYNKVVDVWSKATTEVTEELMRVLKYEELTDPKTGKTEKCHSFNSVFMMA
NSGARGNQDQIRQLAGMRGLMAKPSGEIIETSITSCFREGLTVLQYFTSTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVIVSEYDCKTVDGIELTHVSKGGEITVRLSERVLGRVAMY
DVADPETGEIFIKANELITEDLVAEIERRGVAAITIRSALTCKARHGVCALCYGRDLARG
HLVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGTAHKEVEQNRYVAINKGRVVLSRVRTV
VNDRGERLVLGKSGQLRIVDDTGVEREKYPLPSGAKLFVEAGAEVKKGDVLAEWDPFNEP
FLADVDGVVSFHDIVEGRTVQEKIDETTGKTTLTIMEFRSSNYRPRISVCDAHGATKLRP
DSGTEAVYTLPVGAILMVRDGDAVRPGDVLARKPRETSKTKDIVGGLPRVAELFEVRKPK
DQAVITEIDGVVSFGPDSKGKRKIIVEPEVGEPRVYLIPKGKHITVAEGDFVECGEPLTE
GHPDLHDLLRIKGEKYLAAYLVDGVQDVYRFQGVYINDKHIELIVRQMLRKVTVLEPGDT
GFLMGEQVDKNRFFRTNAKVMASGQRPATAEPLVLGITQASLTTESFISAASFQETTKVL
TEAALLAKKDYLYGLKENVIVGRLVNAGSGFRAYVHSDIVVPEQPESPDKFLEELEKDPY
LVDE
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgaccctagatgacctttttacccagcgtggcagtgccactacgctgttcaatagccag
aatctgaaggccatcggcatcagtctcgcctccccagaaaagatccgtgaatggtcgtat
ggcgaggtgaaaaagccggagaccatcaactatagaacctttaagccggagcgagatggc
cttttctgtgccaagattttcggaccggtaaaggattacgagtgtaattgcggcaaatat
aagcgcatgaagcatcggggtatcgtgtgcgaaaagtgcggcgtggaagtcatcgcttcc
aaggttcgccgtgagcgcatggggcatatcgagcttgcggcccctgtggcgcacatctgg
ttcctcaagtcgcttccctccaagatcggaacattgctcgacatgaccatggccgatctg
gagaaggtgctctatttcgattcgtatattatcttggatcccggagagacgacactgcag
aaaaaacaggtcatctccgaagagcagtatttccagatcttggatcattacggggaagac
gccatcaaggtgggcatgggcgcagagtccatcaagctgctgttgcaagagcttgatctg
cccacattgcgggtgcaactgcgcgaggagtcgcaaaccacccgctcggtaaccaagaag
aaaaagatcgccaagcggctcaagatcattgaggcctttctcgagtctggcaataagcct
gagtggatgatcctcgacgtcatcccggtcattccgccggagctccggcctttggtgcct
ttggatggtggccggttcgccacttcggacctgaacgacctctatcgtcgggtcatcaac
cgcaacaaccgtctgaagcgtctcttggaactcggcgccccggatatcattatccgcaac
gaaaagcgcatgctccaggagtcggtggacgccttgttcgacaacggccgccgcggccgg
gccattacgggcaccaatggtcgtcctctcaagtccttgtcggatatgatcaagggcaag
caggggcgtttccgtcagaacctcttgggcaagcgggtggactactcgggccgttccgtg
atcgtggtggggccgtccttgaagctccaccaatgtggtcttcccaagaaaatggccttg
gagcttttcaagccgtttgtgtacgccaagctggaagagcgcggtattgcgagcaccatc
aagagcgcgaaaaagatggtggagcgcgaagatgtggcggtgtgggacgtgctcgaggaa
gtggtgcgcgaatatccgatcctgctcaaccgcgctcctaccttgcatcgcttgggtatt
caggcctttgagcccctgttggtggaaggcaaggccatccggctgcatccgctcgtgtgc
acggccttcaacgccgacttcgacggtgaccagatggcggtgcacgtgccactgtccatc
gaggcgcagatcgagtgccgcgtgctcatgatgagctccaacaacatcctgtcgccggcc
aacggttcgcccattatcgttccctcccaggatatcgtgcttgggctgtactttttgacc
gtggagcgcccctttgggaagggtgaaggcatggtcttcgccgatcccggcgaagtcatc
tgcgccctggatgccggccacttggatctgcattcccgcatcaaggtccgcatcgacggc
caattggtgcctacgacaccgggccgcatcctggtgcgcgagatcgtgccgccgcaggtg
cctttcgacgtctataatcgggagctgagcaaaaaagccatcggccgtctggtgggcgag
gcctaccgcctggctggcaccaaggccacggtgcttttgtgcgacaaactcaaggacctg
ggctacgaatactccacgcgcgccggctttacggtgtgcgtcaaggacctcaccatcccg
gccaagaaggaggagatcctggcccgttcgtatgccgaagtggcggacatcgagcagcag
taccgtgacggcatcatcacgcgtacggaaaagtacaacaaggtggtggacgtctggagt
aaggcgaccaccgaggtcacggaagagctgatgcgcgtcctcaagtacgaggaactcacg
gatcccaagaccgggaagaccgagaaatgccacagcttcaactcggtgttcatgatggcc
aactccggtgctcgtggtaatcaggaccagatccgtcagttggcgggcatgcgcggcctc
atggccaagccttcgggcgagatcatcgaaacgtcgattacgagctgtttccgcgaaggg
ctcacggtgctccagtacttcacctccacccatggtgcacgcaaggggttggcggacacg
gcgctcaaaaccgccaactccggatatttgacgcgtcgcttggtggacgtggtacaggac
gtcatcgtcagcgagtatgactgcaagaccgtggatggtattgagctcacccacgtgagc
aagggcggcgagatcacggtgcgcttgagcgagcgggtcttgggccgcgtggccatgtac
gatgtggcggaccctgaaaccggtgagatcttcatcaaggccaacgagctcattaccgag
gacctcgtggccgagatcgagcggcgcggcgtggcggccatcaccattcgttcggccttg
acctgtaaggcccgtcacggcgtgtgcgccctgtgctatggccgtgatctggcccgcgga
catttggtcaacgtgggcgaggccgtgggcatcatcgccgcccagtccatcggtgagccg
gggacacagctcaccatgcggaccttccacatcggtggcacggctcacaaggaagtggag
cagaaccgctatgtggccatcaacaagggccgtgttgtcctgtcgcgggtgcgcaccgtg
gtcaatgaccggggcgagcgcttggtgctcggcaaaagtggccaattgcgcatcgtggat
gacacgggcgtggagcgggagaagtatcccttgccgtcgggcgccaagctctttgtggag
gccggcgccgaggtgaagaagggggacgtgctcgccgagtgggatcccttcaacgaaccc
ttcctggcggatgtggacggcgtggtcagcttccatgacatcgtggaaggtcgtacggtg
caggaaaagatcgacgagaccacgggcaagacgacgctgaccatcatggagttccgctcc
tccaactatcgtccccgtatctcggtctgcgatgcccacggcgcgaccaagctgcggccc
gacagcggcaccgaggcggtgtacaccttgccggtgggtgccattctcatggtgcgcgac
ggcgacgcggtgcggccgggcgatgtgctcgcccgcaaaccgcgcgaaacctccaagacc
aaggacatcgtgggtggtttgccgcgggtggccgagctcttcgaagtgcgcaagcccaag
gatcaggcggtcatcaccgagatcgacggcgtggtgagctttgggccggactccaagggc
aagcggaagatcatcgtggagcccgaggtgggcgagccccgggtgtatctcatccccaag
ggtaagcacatcaccgtggccgagggcgacttcgtggaatgcggcgagccgctcaccgaa
gggcacccggatctccacgaccttctgcgcatcaaaggcgagaagtacctggccgcctac
ctggtggacggcgttcaggacgtatatcgattccagggcgtatacatcaacgataagcac
atcgaactgatcgtccgccagatgctgcgcaaggtcacggtgctcgaacccggagacact
ggcttcctcatgggcgagcaggtggacaagaaccggtttttccggaccaacgccaaggtc
atggcttccgggcagcgtcccgccacggccgagccgttggtgttggggattacccaggcg
tcgttgaccacggagtccttcatttcggcggcgtcgttccaggaaaccaccaaggtgctc
accgaggcggcgcttttggccaagaaggactatctctacggcctcaaggaaaatgtcatt
gtgggacgtttggtcaatgccggttcgggcttccgagcctacgtccacagcgacatcgtg
gtgccggagcaaccggagagcccggataagtttttggaagagttggaaaaggacccgtac
ctggtggatgaatga
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