Thermodesulfomicrobium sp. WS: TDMWS_05000
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Entry
TDMWS_05000 CDS
T08730
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
thew
Thermodesulfomicrobium sp. WS
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thew03016
]
TDMWS_05000
Enzymes [BR:
thew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TDMWS_05000
Transfer RNA biogenesis [BR:
thew03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TDMWS_05000
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GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BDV00415
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All DBs
Position
complement(526371..528407)
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AA seq
678 aa
AA seq
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MTHLPAVQPGCIVEFLQDNQPVIAWVLEAVSGKTRVFTIAQREAKLPVSRILPWTGPVQA
AGASRSEMLEALRTHHSRRDTLAESIDTLEIWELAQGELAQADILWLGGLIFTDPTPDHL
AALGRKLLQTKTHFRFNPPQFEIFPEDVVLRRQEELRRAEERRRLVGFGQDFLRALWDRA
QGKATPLPQADAEHEAKLRALLMTRITAPDDRDSETLWKTMAQGLPEEPWMELLLAQAWG
IVPRHYNVHLARAEYDWEPSWAAAFAEEVERLRTAHAEADLPQVATPFITVDAASTQDID
DGFWAEAEGEGWRVQMVLACPALAWAWHSPLDLAVRHRFSSLYLPEGVSHMLPEALGTEA
LSLRADGPRPALVVECRVNAAGEITQCTPQLARVRIAANTTYEAVEKALRDGKVPMLETA
LAAALTLRQRRIQHGAVITEQPDPTISLHGDQPEVRVHTPASTPNAQAMVSEFMILANTA
LAALAVEQHIPLLFRTQNIGLPPECAGVWSEPQDIYRILGRMGPSLLECVPRRHATIAAK
AYATFTSPLRRYVDLINMGQILAVLHGTPPPFSHADLEALLPSLCLRAEMVGQVQRTRPR
YWKFEYLRQRAKTRHFPAVLVDAGTPLATVALPDLALFLKAPRKVFGDKLRVGQRFHLRL
GRVDPLCGEARILEAFEV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacccatctgcctgccgtgcagccgggctgcatcgtggagttcctccaagacaaccag
cccgtcatcgcctgggtgctggaggccgtctccggcaagacccgcgtcttcaccatcgcc
cagcgggaggccaagctgccggtctcccgcatcctgccgtggaccggcccggtgcaggcc
gccggtgcgtcgcgcagcgagatgctcgaagccctgcgcacccatcacagccgccgggac
accctggcggaatccatcgacaccctggagatctgggagctcgcccaaggggaactcgcc
caggcggacatcctctggctcggcggcctcatcttcacggatcccacccccgaccacctg
gccgccttgggccgcaagctcctgcaaaccaagacccatttccgcttcaacccgccgcag
ttcgagatcttcccggaagacgtggtcctgcggcgccaagaagagctgcgccgcgccgaa
gagcgccgccgtctggtgggctttgggcaggatttcctgcgcgccctctgggaccgcgcc
cagggcaaggccacgcccctgccgcaggcggacgcggagcacgaagccaagctgcgcgcg
ctgctcatgacccggatcaccgccccggacgaccgggacagcgaaaccttgtggaagacc
atggcccagggcctgcccgaagaaccttggatggaactcctcttggcccaagcctggggg
atcgtgccacggcattacaacgtgcatcttgcccgggcggagtacgattgggagccctcc
tgggccgccgcctttgccgaagaagtggaacgcctgcgcaccgcgcacgccgaggcggac
cttccccaggtcgccacgcccttcatcaccgtggacgcagcctccacccaggatatcgac
gacggtttttgggccgaggccgaaggcgagggatggcgcgtgcagatggtcttggcctgt
ccggccttggcctgggcctggcacagccccttggaccttgcggtgcgccaccgcttctcc
tccctgtatctgcccgaaggggtgagccacatgctccccgaggccctgggcaccgaggcg
ctgagcctgcgggcggacggtccgcggccggcgctggtggtggaatgccgcgtaaatgcc
gccggggagatcacccaatgcaccccgcagctcgcccgagtccggatcgcggccaacacc
acctacgaggccgtggaaaaggcgctgcgcgacggcaaggtccccatgctcgaaaccgcc
ctcgccgcggcccttacccttcgccagcgccgcatccagcacggcgcggtcatcaccgag
cagccggacccgactatttcccttcacggcgaccagcccgaggtccgcgtccacaccccg
gccagcacgccgaacgcccaggccatggtgtcggaattcatgatcctcgccaacaccgcc
ctggcggccttggcggtggagcagcatatcccgctccttttccgcacccagaacatcggc
cttcccccggagtgcgccggcgtctggagcgagcctcaggacatctaccgcatccttggc
cgcatgggaccatcgcttctggaatgcgtcccccgccgccacgccaccatcgcggccaag
gcctacgccaccttcacctcgcccctgcggcgctacgtggatctgatcaacatggggcaa
atcctcgccgtgctccacggcacgccgccgcccttttcccatgccgacctggaagccctg
ctccccagcctctgcctgcgggcggaaatggtgggccaggtgcagcgcacccggcccaga
tactggaagttcgaatacttgcggcagcgcgccaaaacccgccacttcccggcagtgctc
gtggatgccgggacacccctggccaccgtggcgctgccggacctcgccctcttcctcaaa
gcgccgcgcaaggtcttcggcgacaagctgcgggtgggacagcggtttcacttacgcctc
ggccgggtggacccactgtgcggcgaggcccgcatcctggaggccttcgaagtgtag
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