Thermodesulfomicrobium sp. WS: TDMWS_05790
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Entry
TDMWS_05790 CDS
T08730
Name
(GenBank) HD family phosphohydrolase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDMWS_05790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thew03019
]
TDMWS_05790
Enzymes [BR:
thew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
TDMWS_05790
Messenger RNA biogenesis [BR:
thew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TDMWS_05790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_NucTran2_2
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
BDV00494
LinkDB
All DBs
Position
complement(621980..623299)
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AA seq
439 aa
AA seq
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MPQPIRDAASLCKTIMRNGYDAYVIGAALHERLLAHSKDATVDICTDLDLDGLRGLFPEV
KAAEGPMFATLTQGESVFHFYAADVLDASHPEVCVAQLTPRMILSLQECEEFPLSVACPY
IPQPRDTYDGFESLDRGVVQLKGIPDETLKHDYSRAIRALRFAANYHLPIEANTWMALVR
SSRRVLDYVSVTDIMDEWRKVEAENMWRFVQLLFDTMILHGLVPELAALSRIFETKSEDQ
HESVWEHTVAVMRHYPEELPYDWYGTLACLFHDCGKLYTGESVGERITFYQHHRVGAKVA
RKILKRLRFNTDEVDLICHLVRHHMHFHFMLTDKGIRRFKALDEYPRLIEIARANIKARG
AAYTEFNHNMKMLDRADIREELLEPLLNGKQIMDIAGIKPGPAVGLIRDSLLQAQISGDV
ATVDEAVQFVLRYKELNRL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgccccaacccatccgtgatgccgcctccctgtgcaaaaccatcatgcgcaacggctac
gacgcctacgtcattggcgccgccctgcatgaacgcctgctcgcccattccaaagacgcc
accgtggatatctgcaccgatttggacctcgacggtctgcgcggcctctttcccgaggtc
aaagccgccgaggggccgatgttcgccaccctcacccaaggggaatccgtcttccacttc
tacgccgccgacgtcctcgacgcctcgcatcccgaggtctgtgtggcgcagctcaccccg
cgcatgatcctttccctccaggaatgcgaagagtttcccctttccgtggcctgcccctac
atcccgcaacctcgggacacctacgacggcttcgaatccctggatcgcggggtggtgcag
ctcaagggcattcccgacgaaaccctcaagcacgactactcgcgcgccatccgcgccctg
cgctttgccgccaactaccacctgcccatcgaggccaacacctggatggccttggtgcgc
tcctcccgccgcgtactcgactacgtctcggtcacggacatcatggacgagtggcgcaag
gtggaggcggaaaacatgtggcgcttcgtgcagctgctcttcgacaccatgatcctccac
ggcctggtgcccgagctcgctgccttgtcgcgcatcttcgagaccaagagcgaagaccag
cacgagtccgtatgggagcatacggtagcggtcatgcgccactaccccgaggaactcccc
tacgactggtacggcaccctggcctgcctcttccacgactgcggcaagctctacaccggt
gaaagcgtgggagaacgcatcaccttctaccagcaccatcgggtgggggccaaagtggcc
cgcaagatcctcaagcgtctgcggttcaacaccgacgaggtggacctcatctgccacctg
gtgcggcaccacatgcatttccatttcatgctcaccgacaaaggcatccgccgcttcaag
gccctggacgagtacccgcggctcatcgagatcgcccgagccaacatcaaggcccgcggc
gcggcctacaccgagttcaaccacaacatgaagatgctcgaccgggccgatatccgtgaa
gagctgctggagccgctgctcaacggcaagcagatcatggacatcgccggcatcaagccc
ggccccgcggtggggctgattcgcgacagcctgcttcaggcgcaaatctccggcgatgtc
gccaccgtggacgaggcggtgcaattcgtcctgcgctacaaggagctcaaccgcctgtag
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